PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0913s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24361.6 Da    PI: 6.5166
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0913s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.29.2e-08142166125
                       S---SHHHHHHHHHHHHHHHHHHHH CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAe 25 
                       kri+nk+nrqv f+k rng+l KA+
  Vang0913s00010.1 142 KRIKNKINRQVIFAKGRNGLLNKAY 166
                       79**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF561123.01E-108126IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.101.6E-812126No hitNo description
SuperFamilySSF554553.14E-8134166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.675134166IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-4134188IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-10136156IPR002100Transcription factor, MADS-box
PfamPF003191.6E-4143166IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-10156171IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
LLVYVLLEYG VSFEVSTYGD IFSFGILVLE MLTGKSPRDE MFEDGQNLHN FVTVSFLDNL  60
LQILDPLLVL TEEAAPWTGN NWNLDPNVEM CLVSLFRIGI SCFMKSPKDR MNIADVTREL  120
NQISEHFLVE KIEMVRGRVE LKRIKNKINR QVIFAKGRNG LLNKAYMSSQ SFVMLRLPSS  180
FFPTVASSMS SAAPQGICTF INKLFMLMVV SCLIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0913s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519429.12e-68probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1
RefseqXP_022631646.13e-68probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X3
TrEMBLA0A0L9USG74e-71A0A0L9USG7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T3Q12e-71A0A0S3T3Q1_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VMX46e-67A0A1S3VMX4_VIGRR; probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1
TrEMBLA0A3Q0EKM66e-67A0A3Q0EKM6_VIGRR; probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X3
STRINGXP_007158089.13e-60(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.38e-12MIKC_MADS family protein