PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang08g06620.1 | ||||||||
Common Name | LR48_Vigan11g160800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 88aa MW: 9894.63 Da PI: 10.4471 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.8 | 2e-13 | 1 | 44 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++Er+RR++i + + eL ++lP + kKl+K++i+ k+++Y+k+L+ Vang08g06620.1 1 MAERKRREKISTMMIELSTMLPGL-----KKLDKISIVGKTIDYVKHLE 44 58**********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00010 | 5.5E-11 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.48E-10 | 1 | 47 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-15 | 1 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.773 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-15 | 1 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MAERKRREKI STMMIELSTM LPGLKKLDKI SIVGKTIDYV KHLENRVNDL QEQKRKTESV 60 KCCKNKGSNV NISEKFPKVD ASVSGTI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 7 | ERKRRE |
2 | 3 | 8 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang08g06620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 9e-96 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014516222.1 | 2e-45 | transcription factor bHLH18-like | ||||
TrEMBL | A0A0L9VUX0 | 3e-50 | A0A0L9VUX0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SVH5 | 4e-51 | A0A0S3SVH5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134383.1 | 7e-37 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18248 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 9e-16 | bHLH family protein |
Publications ? help Back to Top | |||
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