PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g05380.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 308aa    MW: 33187.6 Da    PI: 7.4267
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g05380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP751.2e-23194241148
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                     +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr
  Vang08g05380.1 194 RCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSR 241
                     6**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-24188241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.52192265IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-22193241IPR004333Transcription factor, SBP-box
PfamPF031102.3E-17195241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MLDYEWGNPS SIMLTGNEET AAGASDQTHR QIFDHYASHS LIPDHFLHAP THSAVTTAAA  60
PTVDFTNHHH HFNPQPHHHH INNHHHHPFF DPRAFHGASS ASYPPPPSML SLDPLPHVNA  120
TNCGPGPGPG PGGLLLVPKS EDVGRPMDFV GSRIGLNLGG RTYFSSSEDD FVSRLYRRSR  180
PAESGSAASS NSPRCQAEGC NADLSQAKHY HRRHKVCEFH SKAATVIAAG LTQRFCQQCS  240
RGGGGKDESA LGRVLIMIEF AVRSPPDSGA QSSSVTVAVS PPDYFRQRPY QSTNPSTNSS  300
SLFFSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-18195241652squamosa promoter-binding protein-like 12
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g05380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441688.11e-164PREDICTED: squamosa promoter-binding-like protein 8
TrEMBLA0A0L9VUR31e-163A0A0L9VUR3_PHAAN; Uncharacterized protein
STRINGXP_007134545.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.27e-55squamosa promoter binding protein-like 8