PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 258aa MW: 28354.8 Da PI: 4.7853

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang08g05310.4	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1.1e-18	94	145	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Vang08g05310.4 94 PSYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 145 57***998.******843...6*********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	6.13E-33	94	154	No hit	No description
Pfam	PF00847	2.4E-13	94	145	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.301	95	152	IPR001471	AP2/ERF domain
SMART	SM00380	2.7E-37	95	158	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-22	95	153	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.4E-32	95	153	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-10	96	107	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-10	118	134	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MENDADFFNS FASTSTSTTS TTTTTTTTTP SIFIDTTNTS ISSTSSSSSS STSNSSNSDS 60 FTKQHSKTPT TSQTLLENEK ESKGCCKKRK LENPSYRGVR MRNWGKWVSE IREPRKKSRI 120 WLGTYPTAEM AARAHDVAAL AIKGHSAYLN FPELAQELPT PASTSPKDIQ AAAAKAANTP 180 FDVNHCQSTI EDEEREEEPR QTQNVSSSSS NSTNDDDTLF DLPDLFPDEL CSYSSSWHLC 240 AVGSGFRLEE SLFWENY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-17	92	152	11	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang08g05310.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017441350.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	4e-61	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A0S3SVN3	0.0	A0A0S3SVN3_PHAAN; Uncharacterized protein
STRING	XP_007134514.1	1e-108	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	2e-44	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]