PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g04650.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 387aa    MW: 41860.6 Da    PI: 7.597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g04650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-09251298455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Vang08g04650.1 251 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 298
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-16245309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-10245302No hitNo description
PROSITE profilePS5088815.663247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16247309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6251298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MVSSPAASSN PSSNMSNDNF IIRELVGRLG AIGSSDEIPQ HSPHPLVVAS SYMNNGSGSP  60
NTSCYTTPLS SPPKVKTVQS LVNERLANLG GKSITLNSSV AEFSADPGFA ERAAKFSCFG  120
SRSFNGRNVQ LGVNNGELAQ RSASVVENGG KLSRISSSPL LKTLGSQMGT AENKNSAIRD  180
QEKDEGVEVS EDSNSKRTKP NEGEGNENGP VKVEEESKAV EDKQNKSNSK PPEPPKDYIH  240
VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ  300
VEVFQSNNSL ATHPNPTFPL DSSAQAFYGH QHQQNPVIHN NIPNRTVTHC SVDPLDTSLC  360
QNLAMQLPPL NGFNEVASQV QIMYPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g04650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441380.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A0L9VU600.0A0A0L9VU60_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SW230.0A0A0S3SW23_PHAAN; Uncharacterized protein
STRINGXP_007134164.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-76bHLH family protein