PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

M-type_MADS

Protein Properties

Length: 63aa MW: 7442.72 Da PI: 10.7458

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang08g04110.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.3	2e-28	2	52	1	50
S---SHHHHHHHHHHHHHHHHHHH.HHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKA.eELSvLCdaevaviifsstgklyeys 50 kri+n++nrqvtf+kRrng+l KA +ELSvLCdaeva+iifs++gklye+ Vang08g04110.1 2 KRIKNQINRQVTFAKRRNGLLNKAyYELSVLCDAEVALIIFSNRGKLYEFR 52 79********************55*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-24	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-23	1	57	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.628	1	55	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-23	3	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-12	17	32	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-12	32	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
LKRIKNQINR QVTFAKRRNG LLNKAYYELS VLCDAEVALI IFSNRGKLYE FRSTSRYMYI 60 HK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	2e-15	1	55	7	60	Myocyte-specific enhancer factor 2A
3mu6_B	2e-15	1	55	7	60	Myocyte-specific enhancer factor 2A
3mu6_C	2e-15	1	55	7	60	Myocyte-specific enhancer factor 2A
3mu6_D	2e-15	1	55	7	60	Myocyte-specific enhancer factor 2A
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang08g04110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	6e-96	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546327.1	3e-27	PREDICTED: agamous-like MADS-box protein AGL9 homolog
Swissprot	Q39685	1e-25	CMB1_DIACA; MADS-box protein CMB1
Swissprot	Q7Y040	1e-25	EJ2_SOLLC; MADS-box protein EJ2
TrEMBL	A0A151SPN8	3e-27	A0A151SPN8_CAJCA; Agamous-like MADS-box protein AGL9 isogeny
STRING	POPTR_0004s11450.1	1e-26	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	9e-28	MIKC_MADS family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]