PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g03280.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 694aa    MW: 77195.5 Da    PI: 6.1588
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g03280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.3e-24128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  Vang08g03280.1 128 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGNNG 220
                     99****************************977777888*************************************************..34899 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  Vang08g03280.1 221 ELRVGVRR 228
                     99****98 PP
2Auxin_resp965.7e-32254335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F v+Y+Pr+  s+F++ v+k+++a+++k+ vGmRfkm+fe++ds+e  +r+sGt+vg++d++p +W+nSkWrsLk
  Vang08g03280.1 254 ASHAVATQTLFVVYYKPRT--SQFIIGVNKYLEAVSTKFGVGMRFKMRFEGDDSAEtdKRFSGTIVGIEDISP-HWENSKWRSLK 335
                     789***************6..9********************************9833577**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-39119257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-40122243IPR015300DNA-binding pseudobarrel domain
CDDcd100176.85E-21126228No hitNo description
PROSITE profilePS5086312.252128230IPR003340B3 DNA binding domain
SMARTSM010194.0E-22128230IPR003340B3 DNA binding domain
PfamPF023622.9E-22128228IPR003340B3 DNA binding domain
PfamPF065078.7E-30254335IPR010525Auxin response factor
PfamPF023093.6E-7560618IPR033389AUX/IAA domain
PROSITE profilePS5174525.347582663IPR000270PB1 domain
SuperFamilySSF542771.7E-12584658No hitNo description
PfamPF023092.2E-6625666IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MLSRASNVSA EAVVGSGDGE DELYEQQWKA CAGPLVDVPR VGQRVFYFPQ GHMEQLEAST  60
NQELNQRIPL LHLPTKILCR VVNVHLLAEQ ETDEVYAQIT LVPESNQDEP SSPDPCTAEP  120
TRAPAHSFCK VLTASDTSTH GGFSVLRKHA TECLPALDMS QPTPTQELVA KDLHGYEWRF  180
KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD TFVFLRGNNG ELRVGVRRLA RQASSMPSSV  240
ISSQSMHLGV LATASHAVAT QTLFVVYYKP RTSQFIIGVN KYLEAVSTKF GVGMRFKMRF  300
EGDDSAETDK RFSGTIVGIE DISPHWENSK WRSLKVQWDE LAAVPRPERV SPWEIEPFVA  360
SSTPSVQPTI VKTKRPRPSS EVPDVDATSA ASVFWDTDLP QPDTTQINVL AESKQNDNTG  420
TWHHMQTDMN SKSNSNNTML RNQTEGSWLS SPHSSCPSQL FQDTTDDSKS VSAWPVSKPH  480
PSRLNNEHVL DQVDKESKVE TATSYRLFGI DLIDHSRNSY AVEKASPHAV NVPKVTTEGC  540
TSTLSQTDAG HMSEVPKASS KERKQEQQQV SPKESQSKQI SRSRTKVQMQ GVAVGRAVDL  600
TMLDGYNQLI NELEEMFDIK GQLQHRNKWE IVFTDDEGDM MLVGDDPWPE FCSMVRRIFI  660
CSSQDVKKMN CGSKLPISSV EDGTVISSDT TET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1662135817355Auxin response factor 1
4ldw_A1e-1662135817355Auxin response factor 1
4ldw_B1e-1662135817355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g03280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442390.10.0PREDICTED: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0S3SX110.0A0A0S3SX11_PHAAN; Auxin response factor
STRINGXP_007134010.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9