PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g02340.1
Common NameLR48_Vigan11g107000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 165aa    MW: 18853.2 Da    PI: 7.6979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g02340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-104384955
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r RR+ri ++f  L++++P        K++ +++Le+A++Y+k+L+
  Vang08g02340.1 43 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEEAIQYVKYLK 84
                    699*****************95.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3643483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-143995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-124088IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-124089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-134087No hitNo description
PfamPF000103.6E-84383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDYTHPASSD AGSSSKANRS KEKKGAKKCK GVRLSTDPQS VAARERRHRI SDRFKILQSM  60
VPGGSKMDTV SMLEEAIQYV KYLKTQIWLH QTMINFLDDN DSLSPMYLTD FYFPSDPSEQ  120
FIFPQQNPPL DHNMHNFPHL PPPQCSFHGE DTTYFDASFK YWPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g02340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511795.11e-103transcription factor bHLH140
TrEMBLA0A0L9VT621e-120A0A0L9VT62_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SX681e-120A0A0S3SX68_PHAAN; Uncharacterized protein
STRINGXP_007134758.11e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-33APRATAXIN-like
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]