PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0874s00010.3

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 869aa MW: 97103.9 Da PI: 5.2566

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0874s00010.3	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	56.6	5.1e-18	62	106	74	118
CG-1 74 KvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +vg+v+vl+cyYah+een++fqrr+yw+Le+++ +iv+vhyl+vk Vang0874s00010.3 62 QVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMMHIVFVHYLDVK 106 599***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	24.385	1	111	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.8E-7	18	106	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-14	62	105	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.8E-4	456	544	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	3.5E-16	458	544	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.9E-5	458	543	IPR002909	IPT domain
SuperFamily	SSF48403	1.54E-10	643	712	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.8E-9	650	711	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.32E-7	657	713	No hit	No description
PROSITE profile	PS50297	13.894	658	723	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50096	6.961	714	738	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence Send to blast
MAERGSYGLG PRLGVNGLDH GLIFSNYNSK PRIGGCALRK YVKFFAIIGC FKSLQNHLPG 60 HQVGSVDVLH CYYAHGEENE NFQRRSYWML EQDMMHIVFV HYLDVKVNKT NVGGKTYSGE 120 ATSDSQKGSS LSSGFPRNYG SVPSGSTDSM SPTSTLTSLC EDADSEDIHQ ASSGSQSYHE 180 SKCLGNDCPI DKIDARSNNS YLMHPSSGDR GQFPVPGSEY IPLIQGHRAH DIASWDDAME 240 QSSGKHTAPS LVSSTSIPPS ASGNILEENN AVPGNLLGHK NVLIEEERVS QALHSNWQIP 300 FGDDTGELPK WSLTQTLGLE FGSDYGTSLL GDVAGSEILA EMFTFNGELK EKSVNQNISK 360 QYTNTQSQPA TKSNSDYEVA GEASINYTLT MKRGLLDGEE SLKKVDSFSR WITKEFAGVD 420 DLHTQSSPGI SWNTDDCGDV IDDTSLNLSL SQDQLFSIND FSPKWAYAES EIEVLIVGTF 480 LKSQPMVTAC NWSCMFGEVE VPAEVLANGI LCCQAPPHKI GRVPFYITCS NRFACSEVRE 540 FEYREGFDRN IDFTDLFTSS TEMVLHLRLV GLLSLNSVHT SNQVLEDDME KRNLIFKLIS 600 LKEEEEYSSR EETTVEIDVT KHKLKEHMFH KQVKEMLYSW LLHKVTETGK GPLVLSEEGQ 660 GVLHLVAALG YDWAIKPIIT AGVNINFRDV SGWTALHWAA YCGRIKSILL FSNRSKTVEF 720 MNAHVRGHQV RKQYRTIIWS VGILEKVILR WRRKGSGLRG FRSDTVNKVI PDQPIESPKE 780 DDYDFLKEGR KQSEARFQKA LSRVKSMVQY PEARAQYRRV LNVVEDFRQT KGDNLNSMNS 840 EEAVDGVEDL IDIDMLLDDE NFLPIAFD*

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence Send to blast

MAERGSYGLG PRLGVNGLDH GLIFSNYNSK PRIGGCALRK YVKFFAIIGC FKSLQNHLPG  60
HQVGSVDVLH CYYAHGEENE NFQRRSYWML EQDMMHIVFV HYLDVKVNKT NVGGKTYSGE  120
ATSDSQKGSS LSSGFPRNYG SVPSGSTDSM SPTSTLTSLC EDADSEDIHQ ASSGSQSYHE  180
SKCLGNDCPI DKIDARSNNS YLMHPSSGDR GQFPVPGSEY IPLIQGHRAH DIASWDDAME  240
QSSGKHTAPS LVSSTSIPPS ASGNILEENN AVPGNLLGHK NVLIEEERVS QALHSNWQIP  300
FGDDTGELPK WSLTQTLGLE FGSDYGTSLL GDVAGSEILA EMFTFNGELK EKSVNQNISK  360
QYTNTQSQPA TKSNSDYEVA GEASINYTLT MKRGLLDGEE SLKKVDSFSR WITKEFAGVD  420
DLHTQSSPGI SWNTDDCGDV IDDTSLNLSL SQDQLFSIND FSPKWAYAES EIEVLIVGTF  480
LKSQPMVTAC NWSCMFGEVE VPAEVLANGI LCCQAPPHKI GRVPFYITCS NRFACSEVRE  540
FEYREGFDRN IDFTDLFTSS TEMVLHLRLV GLLSLNSVHT SNQVLEDDME KRNLIFKLIS  600
LKEEEEYSSR EETTVEIDVT KHKLKEHMFH KQVKEMLYSW LLHKVTETGK GPLVLSEEGQ  660
GVLHLVAALG YDWAIKPIIT AGVNINFRDV SGWTALHWAA YCGRIKSILL FSNRSKTVEF  720
MNAHVRGHQV RKQYRTIIWS VGILEKVILR WRRKGSGLRG FRSDTVNKVI PDQPIESPKE  780
DDYDFLKEGR KQSEARFQKA LSRVKSMVQY PEARAQYRRV LNVVEDFRQT KGDNLNSMNS  840
EEAVDGVEDL IDIDMLLDDE NFLPIAFD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0874s00010.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439272.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like
TrEMBL	A0A0S3R086	0.0	A0A0S3R086_PHAAN; Uncharacterized protein
STRING	XP_007159108.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	1e-152	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains