PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0815s00010.1 | ||||||||
Common Name | LR48_Vigan03g164800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 193aa MW: 22440 Da PI: 6.6653 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.3e-10 | 16 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l++++ +G g ++Rt+k+c++rw++yl Vang0815s00010.1 16 KGPWTMEEDLILINYISNHGEG----------LKRTGKSCRLRWLNYL 53 79******************99..........68************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1e-17 | 59 | 102 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Vang0815s00010.1 59 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 102 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-16 | 9 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.15 | 11 | 53 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-26 | 13 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-5 | 15 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-8 | 16 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-5 | 18 | 53 | No hit | No description |
PROSITE profile | PS51294 | 25.859 | 54 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-25 | 57 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 59 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.76E-12 | 63 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDKKQCNTSQ DPEVRKGPWT MEEDLILINY ISNHGEGLKR TGKSCRLRWL NYLRPDVRRG 60 NITPEEQLLI MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ AENSQQQSNS 120 NSEINDHQAS TSQVSTMAEP METYSSPCYQ GMLEPFSTQF PNIPDQSSCC TNENNNYWSM 180 EDIWSMQLLN GD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-24 | 11 | 108 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0815s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027927196.1 | 1e-137 | myb-related protein 305-like | ||||
Swissprot | P81391 | 6e-85 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A4D6NE49 | 1e-136 | A0A4D6NE49_VIGUN; Myb proto-oncogene protein | ||||
STRING | XP_007140962.1 | 1e-131 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 2e-76 | myb domain protein 21 |
Publications ? help Back to Top | |||
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