PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 330aa MW: 35935.3 Da PI: 8.6662

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang07g06850.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	6e-19	127	177	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge Vang07g06850.2 127 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 177 59****9.******954...5************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.34E-17	126	186	No hit	No description
SuperFamily	SSF54171	1.7E-22	127	184	IPR016177	DNA-binding domain
SMART	SM00380	1.0E-35	127	190	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.3E-31	127	185	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.301	127	184	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.2E-10	128	139	IPR001471	AP2/ERF domain
Pfam	PF00847	3.3E-13	128	177	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.2E-10	150	166	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MDGMQERNSQ LGTDIGSSLS KLILTSGSNT LDSIFSDCPP TNAASSNSVL DYLEPFGSSG 60 FEPLGSSVYL RQRDILQKFY QESRGNGNGN GNGNGSLLPT SLANPSINSL YTASLTSSLT 120 NPSKKKLYRG VRQRHWGKWV AEIRLPQNRM RVWLGTYDTA EAAAYAYDRA AYKLRGEYAR 180 LNFPNLKDPT KLGFGDSARL NALKSSVDAK IQAICQKVKR ERAKKIAAKK LSSATAHATR 240 KESEKINSSA SSSSSSLPLS PPSIFCDNWA NELFSPSVSE DGIWKGENSP TTVSTECQMM 300 VTDETEFEGC SLARLPSFDP ELIWEVLAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-20	126	184	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	6e-20	123	184	1	63	ATERF1
3gcc_A	6e-20	123	184	1	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang07g06850.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017407212.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF061
Swissprot	Q9C7W2	4e-69	ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBL	A0A0L9T985	0.0	A0A0L9T985_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T603	0.0	A0A0S3T603_PHAAN; Uncharacterized protein
STRING	XP_007158572.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7181	31	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64380.1	1e-57	ERF family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]