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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g06680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 27641.9 Da PI: 4.9157 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.4e-20 | 39 | 90 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++++GVr+++ +g+W+AeIrdps r r +lg+++taeeAa +++a+ kl+g+ Vang07g06680.1 39 KKFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAALVYDNAAIKLRGP 90 59********.**********84....34*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.60E-33 | 39 | 96 | No hit | No description |
Pfam | PF00847 | 2.7E-13 | 40 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-30 | 40 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.578 | 40 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 40 | 96 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-36 | 40 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MIKVAAPYFI SVKGRPRVRR RSVVGKGRVA ETPRGSTGKK FRGVRQRPWG KWAAEIRDPS 60 RRVRLWLGTY DTAEEAALVY DNAAIKLRGP DALTNFITPP ATWHNKDQTP VSNGYASVEE 120 TQNKNLFSPT SVLHSCSLSE EAESVTGKDD DYSSVSESSK AKAESPFPVP IPIPSELKFD 180 FEDCLAAPDV YGELDGAAAA ESVLFSDDDW PGVFLTACED FGLKSWHADR NHDFFQDIDD 240 LFVSDPLLAL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 36 | 96 | 1 | 62 | ATERF1 |
3gcc_A | 3e-21 | 36 | 96 | 1 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g06680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017407214.1 | 1e-172 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A0L9T975 | 1e-171 | A0A0L9T975_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158558.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 6e-39 | cytokinin response factor 1 |