PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g05740.1
Common NameLR48_Vigan03g217900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 280aa    MW: 31393 Da    PI: 5.6963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g05740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192978255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Vang07g05740.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDEAARRLYG 78
                    69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-322888No hitNo description
Gene3DG3DSA:3.30.730.108.4E-312987IPR001471AP2/ERF domain
SMARTSM003801.5E-382992IPR001471AP2/ERF domain
PfamPF008473.8E-132978IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-212987IPR016177DNA-binding domain
PROSITE profilePS5103222.8932986IPR001471AP2/ERF domain
PRINTSPR003671.4E-103041IPR001471AP2/ERF domain
PRINTSPR003671.4E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDTCKKSPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFS  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLQP RSTSPITPGK FKWFPSKNFI SMFPSCGLLN  120
LSAQPSVHFI HQRLQELKKN SVERQSPNSS SNDPEAEIQN VVDNTNHAES PPKDSQTSSE  180
EVPGDIQEKP QIDLHEFLQQ LGILKDEKQS ADSTESSTVP EAVLRYKNDE LGVFSDTSVN  240
WEALIEMHGI AGIQELESTQ LEAYGPNDDL TFSTSIWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g05740.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418150.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX56e-85DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A0L9U8130.0A0A0L9U813_PHAAN; Uncharacterized protein
STRINGXP_007162244.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.16e-77ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]