PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 204aa MW: 22879.8 Da PI: 7.985

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang07g04940.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.2	5.1e-17	50	104	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Vang07g04940.1 50 RKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTK 104 778899***********************************************98 PP
2	HD-ZIP_I/II	125.7	2e-40	50	139	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk q+++LE+sF+e+++L+p++K la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l Vang07g04940.1 50 RKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLSEENKRLQKELQELR-AL 139 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.601	46	106	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-18	47	115	IPR009057	Homeodomain-like
SMART	SM00389	7.2E-15	48	110	IPR001356	Homeobox domain
CDD	cd00086	2.86E-14	50	107	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-16	50	104	IPR009057	Homeodomain-like
Pfam	PF00046	1.6E-14	50	104	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	81	104	IPR017970	Homeobox, conserved site
Pfam	PF02183	6.8E-11	106	140	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	9.1E-23	106	149	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MEDTPVRALD DTDDGAAVSS PNNSAVSSFC RNSRKFFEGD SEEDENGSTR KKLRLSKTQS 60 AFLEDSFKEH TTLNPKQKLV LAKELNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE 120 SLSEENKRLQ KELQELRALK TCEPFFMQLP ATTLTMCPSC ERVATTTSAA ASATNNDRVS 180 LNKPRILSGP HAAGLHGPSE CFF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	54	TRKKLRL
2	98	106	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang07g04940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-172	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017418134.1	1e-148	PREDICTED: homeobox-leucine zipper protein HAT14
Swissprot	P46665	1e-75	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A0L9U7Z0	1e-146	A0A0L9U7Z0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RXN9	1e-146	A0A0S3RXN9_PHAAN; Uncharacterized protein
STRING	XP_007162339.1	1e-114	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2335	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-75	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]