PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 284aa    MW: 32093.1 Da    PI: 7.8669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-163381148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++ +G+g +W + ++++g++R++k+c++rw++yl
   Vang07g03010.1 33 KGPWSPEEDAKLKAYIEHHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 81
                     79*********************************************97 PP
2Myb_DNA-binding37.55.4e-1288130246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   Vang07g03010.1  88 GGFSEEEDNIICSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 130
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8382881IPR017930Myb domain
SuperFamilySSF466897.35E-2730128IPR009057Homeodomain-like
SMARTSM007171.2E-123283IPR001005SANT/Myb domain
PfamPF002491.7E-153381IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-243488IPR009057Homeodomain-like
CDDcd001673.73E-93581No hitNo description
PROSITE profilePS5129421.65482136IPR017930Myb domain
SMARTSM007177.9E-1186134IPR001005SANT/Myb domain
PfamPF002491.1E-1088130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2389136IPR009057Homeodomain-like
CDDcd001671.51E-790132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
LAYLRLRPTD TEREGGRADM GRAPCCDKAN VKKGPWSPEE DAKLKAYIEH HGTGGNWIAL  60
PQKIGLKRCG KSCRLRWLNY LRPNIKHGGF SEEEDNIICS LYVSIGSRWS IIAAQLPGRT  120
DNDIKNYWNT RLKKKLLGKQ RKEQQIQARR VSNNQQKQDV KRETENLIAA SEVINQVPYC  180
VPYQPSNIFQ GFENFPSDFC ELVCVNSQEM DRSMEGFNYG RESMDVMSNG GSTNTTSTES  240
TSWGDMNSLV YSPLVSDYEG CRQGNPGNVV GFEECNYFGM QMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24331367108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g03010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0974030.0BT097403.1 Soybean clone JCVI-FLGm-16K1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362138.11e-151transcription factor RAX3-like
TrEMBLG7K1651e-123G7K165_MEDTR; Myb transcription factor
STRINGAES944911e-123(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-78myb domain protein 84