PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0717s00040.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8428.1 Da    PI: 12.0186
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0717s00040.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.11.5e-10226125
                      S---SHHHHHHHHHHHHHHHHHHHH CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAe 25
                      kri+n++nrqvtf+kRrng+l  A+
  Vang0717s00040.2  2 KRIKNQINRQVTFAKRRNGLLNNAY 26
                      79*******************8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.27E-7126IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.755126IPR002100Transcription factor, MADS-box
PfamPF003192.3E-7326IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
LKRIKNQINR QVTFAKRRNG LLNNAYMSSQ SFVILRLPSS FFPTVASSMS SVAPQGICTF  60
INKLFMLMVV SCLIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0717s00040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-124AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.33e-10MIKC_MADS family protein