 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Vang0711s00030.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
Trihelix |
| Protein Properties |
Length: 174aa MW: 19296.6 Da PI: 10.844 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang0711s00030.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 52.8 | 1.1e-16 | 28 | 118 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ + +Liea e++ +l+rg+l++ +W+ev++ + + +r+ +qCk++++ l+k+yk +k++ ++ +s + +p+f++le
Vang0711s00030.1 28 CWSEEATFTLIEAWGERHLELNRGNLRQRHWQEVADTVnarhgnAGARARRTDVQCKNRIDTLKKKYKIEKARVSDS-GDSATAWPFFRRLE 118
7*************************************9988766667799*********************99985.677779*****997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 174 aa
Download sequence Send
to blast |
MDSIAGAPPH TATPPSSRPS PFPGREDCWS EEATFTLIEA WGERHLELNR GNLRQRHWQE 60
VADTVNARHG NAGARARRTD VQCKNRIDTL KKKYKIEKAR VSDSGDSATA WPFFRRLEFL 120
IGDNFPAKKP SPPESGSADR RSTPPAKSPA WALIPLHLQK MNRSNSKRSS ATG*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G58630.1 | 2e-38 | sequence-specific DNA binding transcription factors |
