PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g26170.1 | ||||||||
Common Name | LR48_Vigan02g008200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 23568.8 Da PI: 4.6428 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.7e-17 | 5 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ +++++G g W++Ia++++ gRt++++k+ w+++l Vang06g26170.1 5 KGPWTQDEDQILISYIQKHGHGnwralpklagtssMWSAIAAKLP-GRTDNEIKNVWHTHL 64 79*******************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.652 | 1 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-15 | 2 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 3 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 4 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-15 | 5 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.66E-11 | 7 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGLKKGPWTQ DEDQILISYI QKHGHGNWRA LPKLAGTSSM WSAIAAKLPG RTDNEIKNVW 60 HTHLKKKLLN SDSKRVVSNP KIKRSDSNSS TLTSSSACTS SSDFSSFSEE NKSTNNNSMI 120 KSEDTESEET TMPPIDESFW SEATVEDESS TMMMPSNSWT ISNEPQFNHV ETFQQHSFGY 180 NGSNFDDGMD FWYDIFIRSE ESIELPEF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g26170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414677.1 | 1e-121 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A0L9TU47 | 1e-120 | A0A0L9TU47_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SUZ4 | 1e-120 | A0A0S3SUZ4_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA02G00820.1 | 4e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 9e-32 | myb domain protein 14 |
Publications ? help Back to Top | |||
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