PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g25510.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 442aa    MW: 49359.5 Da    PI: 8.5542
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g25510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1352.2e-4280179297
           NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     +k fw++q   ie+ td++ +h++Pl+r+kki+k+d dvk +saeaPv+++kacelfi+elt+++w +ae+n+r+t+kksd+a+a++rtd+fdfl
  Vang06g25510.1  80 VKCFWAQQlkeIEERTDLRnRHSIPLSRVKKIMKSDADVKLVSAEAPVVFAKACELFIMELTMKAWANAEDNNRSTIKKSDVASAIARTDVFDFL 174
                     789***9998899*****95689************************************************************************ PP

           NF-YC  93 vdivp 97 
                      di p
  Vang06g25510.1 175 EDIAP 179
                     **987 PP
2NF-YC131.52.8e-413024022100
           NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                     +k+fwe+q   i++++d+k ++lPl+rikki+k+dedvkm+s+ea +ll kacelfi+elt+rsw h e+ kr+ ++k+d+a+a++  d+fdflv
  Vang06g25510.1 302 VKTFWERQmkeIKESSDLK-NNLPLSRIKKIMKFDEDVKMVSSEATMLLGKACELFIMELTMRSWAHVEDDKRKIIQKTDVASAISMNDMFDFLV 395
                     699*****33334455665.58************************************************************************* PP

           NF-YC  94 divprde 100
                     d+vprd+
  Vang06g25510.1 396 DVVPRDD 402
                     *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.54E-2733174IPR009072Histone-fold
PfamPF008083.3E-18102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.6E-31104179IPR009072Histone-fold
SuperFamilySSF471135.87E-26295394IPR009072Histone-fold
PfamPF008088.2E-18322385IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-30323400IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
LDSIGVASME QNQHGQPGRG IGSAPAQEAH NKNHYQSKPT NPPIQTVGPS VPSPYPGEHH  60
SALGRMHRQQ QQQDQLEEKV KCFWAQQLKE IEERTDLRNR HSIPLSRVKK IMKSDADVKL  120
VSAEAPVVFA KACELFIMEL TMKAWANAED NNRSTIKKSD VASAIARTDV FDFLEDIAPI  180
PRVHKNTMMH PLLPGNAPTP TENVPYMPPP QHVASPPPPY VAATTLHQIP HALQTYPLAP  240
TVKMDQNQRR EAGKRIGGAP AQADGGKKQA VGVPVASPYA GGYRYDRQCI YQRQQEQLQQ  300
RVKTFWERQM KEIKESSDLK NNLPLSRIKK IMKFDEDVKM VSSEATMLLG KACELFIMEL  360
TMRSWAHVED DKRKIIQKTD VASAISMNDM FDFLVDVVPR DDTVPVMAGQ QGPCYPVIFP  420
SVNGEKTFCI PNAFINVTQT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-3687400395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g25510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412816.11e-166PREDICTED: nuclear transcription factor Y subunit C-2-like
TrEMBLA0A0L9TTU51e-165A0A0L9TTU5_PHAAN; Uncharacterized protein
STRINGXP_007147757.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2069625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-42nuclear factor Y, subunit C2