PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g25000.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 323aa    MW: 35302 Da    PI: 6.1122
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g25000.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.55.3e-374094660
          zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                     +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
  Vang06g25000.2 40 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 94
                    58***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-222685IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6774094IPR003851Zinc finger, Dof-type
PfamPF027012.6E-314094IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MCIKSNFTTT LNVLYHNFSS NIKVFVMMES GWKAEVEISP NCPRCGSSNT KFCYYNNYSL  60
TQPRYFCKGC RRYWTKGGSL RNVPVGGGCR KNRRGNKTLL RQSIDGFTFK TSSSSPCGNA  120
TDHNNNPVGH SYDPRIRTSA ASSSSSGMSD GPNIDLALVY ANFLNQNPSS ESGIESSNPD  180
QVRTAFDPSL ENNSRLSNTD VSDPSTLPEE IALTGCLNLP EQPSTHSAEA NNGGQICYGD  240
FNSMQTIQKD GIQQCSSHGG AVNFELPPLP GEVEASHDDH HHHMMWSNSE MMTFQATQPP  300
LLGPEVHDAD LLIGNWSPFD LP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g25000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640721.10.0dof zinc finger protein DOF3.5
TrEMBLA0A0S3SUM10.0A0A0S3SUM1_PHAAN; Uncharacterized protein (Fragment)
STRINGGLYMA10G10142.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.17e-38Dof family protein