PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g24890.1 | ||||||||
Common Name | LR48_Vigan02g016400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YA | ||||||||
Protein Properties | Length: 367aa MW: 40057.3 Da PI: 7.3248 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96 | 4.2e-30 | 161 | 217 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p +VNaKQy++I++RRq+Rak+ e+kl +k rkpy+heSRh hA+rRpRg+gGrF Vang06g24890.1 161 DAPTFVNAKQYHGIIRRRQSRAKAVLENKL-IKRRKPYMHESRHLHAMRRPRGNGGRF 217 579***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.8E-34 | 159 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.547 | 160 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.8E-22 | 163 | 185 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-25 | 163 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.8E-22 | 194 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
LKMAMQTAYL KEHEGIVHNS VGQLSSGTSA PWWNGLGSQP VYGDYCGQNK PFSLEFSNYI 60 DPFAGGKQAV RGAEPVIDRG HATQFSIFPE ECKMLGDAQN PQPAIGLQPS LAEPTNNFDI 120 GFNQPMMCAP YPCMEQFCAI TAYGPQISGR IMLPHNMASD DAPTFVNAKQ YHGIIRRRQS 180 RAKAVLENKL IKRRKPYMHE SRHLHAMRRP RGNGGRFLNT RNSNNGNGGN DSEVNNMGGL 240 QFLSSASQSS EMLQSDVGIN SPMETDECSP NMSSTEVNSM FSREGFDGFS VNPLGSSVLP 300 LGSPVYPLGS SVHSLTNLVV LENFVLSDLG KPFLAKLRPF IPGSPHSAKA FHDMDVLYMV 360 MAMQST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-17 | 161 | 225 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 194 | RRRQSRAKAVLENKLIKRRK |
2 | 175 | 195 | RRRQSRAKAVLENKLIKRRKP |
3 | 176 | 195 | RRQSRAKAVLENKLIKRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g24890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412625.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_017412627.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_017412628.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_017412629.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_017412630.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_017412631.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A0L9TV31 | 0.0 | A0A0L9TV31_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145780.1 | 1e-158 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3794 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 9e-44 | nuclear factor Y, subunit A10 |
Publications ? help Back to Top | |||
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