PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 357aa MW: 38905.1 Da PI: 8.1069

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g24030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	6.9e-06	311	336	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L+el+P+ + Vang06g24030.1 311 SIAERVRRTRISERMRKLQELVPNmD 336 689********************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.972	305	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-6	308	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00116	309	337	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-5	310	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDSHTHHHQD YQLHLHQNQP SSGLLRFRSA PSSLFSNLTP FVSYGADTAA SSSFRELEEN 60 SNQKCCSKDF SLMNSHKGYG GGLPPHYPRH GSSSATSSSS MEGPYGLVGS MGMDHEAPNK 120 GFGSSLLRQS SSPAGLFSNN NVSFQNGFVT MKGVGNYGGV NDNNGELSPC ISRLKNQINF 180 SPRNSSSLGM LSQISEIGSE DIETTSPDDN TTHGGNDTQH FGPGFPYGSW NETLQLSENL 240 SGLKRGRSDS EKIFSDVQNG EPGNQVNILS HHLSLPKTSA EMITMEKLLQ FPDSVPCKIR 300 AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKTLG DKRSNCKCSN MQKADS*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDSHTHHHQD YQLHLHQNQP SSGLLRFRSA PSSLFSNLTP FVSYGADTAA SSSFRELEEN  60
SNQKCCSKDF SLMNSHKGYG GGLPPHYPRH GSSSATSSSS MEGPYGLVGS MGMDHEAPNK  120
GFGSSLLRQS SSPAGLFSNN NVSFQNGFVT MKGVGNYGGV NDNNGELSPC ISRLKNQINF  180
SPRNSSSLGM LSQISEIGSE DIETTSPDDN TTHGGNDTQH FGPGFPYGSW NETLQLSENL  240
SGLKRGRSDS EKIFSDVQNG EPGNQVNILS HHLSLPKTSA EMITMEKLLQ FPDSVPCKIR  300
AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKTLG DKRSNCKCSN MQKADS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g24030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413647.1	0.0	PREDICTED: transcription factor bHLH130-like
TrEMBL	A0A0L9TUR5	0.0	A0A0L9TUR5_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SUF9	0.0	A0A0S3SUF9_PHAAN; Uncharacterized protein
STRING	XP_007145653.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5177	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-70	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]