PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 213aa MW: 23930.9 Da PI: 6.9368

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g23100.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58	2.4e-18	118	168	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +r++lg+f+++ +Aaka++ a+ k++g Vang06g23100.1 118 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 168 8******.******8542..4******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.63E-30	117	176	No hit	No description
PROSITE profile	PS51032	24.316	118	176	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-31	118	177	IPR001471	AP2/ERF domain
SMART	SM00380	4.6E-35	118	182	IPR001471	AP2/ERF domain
Pfam	PF00847	3.5E-13	118	168	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-22	118	177	IPR016177	DNA-binding domain
PRINTS	PR00367	4.0E-13	119	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-13	158	178	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:1902074	Biological Process	response to salt
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MTTAEETSNL DLIRQHLLGE NISTSFFSNF SNLVKLEAPS SAEFDFSSYI SDNTSFFTFL 60 EGYDLVADME FVDQKPIMNS TSTSTISIPL NKCNSPEPLA SSESQEKAKK AEYDVGKRYR 120 GVRRRPWGKF AAEIRDPTRK GTRVWLGTFD SEIDAAKAYD CAAFKMRGQK AILNFPLEAG 180 EYDPKPNTCG RKRRRESLQL ELPQVHLHHG VS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-28	116	177	3	64	ATERF1
3gcc_A	5e-28	116	177	3	64	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	194	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g23100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413756.1	1e-159	PREDICTED: ethylene-responsive transcription factor ERF107-like
TrEMBL	A0A0L9TVX3	1e-158	A0A0L9TVX3_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3STW2	1e-158	A0A0S3STW2_PHAAN; Uncharacterized protein
STRING	XP_007145470.1	1e-128	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5257	30	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	5e-42	ERF family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]