PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g23040.1 | ||||||||
Common Name | LR48_Vigan02g047700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 94aa MW: 10462.7 Da PI: 7.5253 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.3e-08 | 10 | 56 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 g+W++ + + + +a + + ++ +W+ +a +g g+t+ ++k ++ Vang06g23040.1 10 GSWSAKDNKAFERALAVYDKDtpdRWNNVALAVG-GKTPDEVKRHYEL 56 89********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.293 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 3.2E-8 | 8 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-7 | 9 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-6 | 11 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-12 | 11 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-6 | 11 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MASSSMSATG SWSAKDNKAF ERALAVYDKD TPDRWNNVAL AVGGKTPDEV KRHYELLLRD 60 ITEIESGQVP FPNYKKTAES DEEGKRLKNM KLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-36 | 1 | 93 | 1 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g23040.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-142 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414297.1 | 4e-64 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 3e-36 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A0L9TV83 | 9e-63 | A0A0L9TV83_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3STR4 | 9e-63 | A0A0S3STR4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145477.1 | 2e-54 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-34 | RAD-like 1 |
Publications ? help Back to Top | |||
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