PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 94aa MW: 10462.7 Da PI: 7.5253

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g23040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.3e-08	10	56	2	46
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 g+W++ + + + +a + + ++ +W+ +a +g g+t+ ++k ++ Vang06g23040.1 10 GSWSAKDNKAFERALAVYDKDtpdRWNNVALAVG-GKTPDEVKRHYEL 56 89******************************.*********76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.293	7	62	IPR017884	SANT domain
SMART	SM00717	3.2E-8	8	60	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-7	9	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-6	11	65	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.42E-12	11	65	IPR009057	Homeodomain-like
CDD	cd00167	1.34E-6	11	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009630	Biological Process	gravitropism
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010114	Biological Process	response to red light
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MASSSMSATG SWSAKDNKAF ERALAVYDKD TPDRWNNVAL AVGGKTPDEV KRHYELLLRD 60 ITEIESGQVP FPNYKKTAES DEEGKRLKNM KLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-36	1	93	1	93	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g23040.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-142	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414297.1	4e-64	PREDICTED: protein RADIALIS-like 3
Swissprot	Q58FS3	3e-36	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A0L9TV83	9e-63	A0A0L9TV83_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3STR4	9e-63	A0A0S3STR4_PHAAN; Uncharacterized protein
STRING	XP_007145477.1	2e-54	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF154	34	280

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	1e-34	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]