PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 57aa MW: 6732.81 Da PI: 10.4968

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g22330.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	25.5	3.2e-08	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r+ nL++H r H Vang06g22330.1 22 FICEICNKGFQRWQNLQHHRRGH 44 89*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.53E-6	21	45	No hit	No description
Pfam	PF12874	7.2E-5	22	44	No hit	No description
PROSITE profile	PS50157	10.575	22	44	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-6	22	44	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0029	22	44	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	24	44	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 57 aa Download sequence Send to blast
LGDPDAEVMA LSPKSLLAIN KFICEICNKG FQRWQNLQHH RRGHNFLWKL KQRTSKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g22330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-87	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017487.1	1e-26	PREDICTED: protein indeterminate-domain 2
Refseq	XP_016687546.1	1e-26	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_021896421.1	1e-26	protein indeterminate-domain 2-like isoform X1
Refseq	XP_022009618.1	1e-26	protein indeterminate-domain 2-like
Refseq	XP_022751372.1	2e-26	protein indeterminate-domain 2-like
Refseq	XP_022751373.1	2e-26	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	4e-26	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0S3SU53	5e-28	A0A0S3SU53_PHAAN; Uncharacterized protein
STRING	EOY14712	5e-26	(Theobroma cacao)
STRING	evm.model.supercontig_216.26	4e-26	(Carica papaya)
STRING	evm.model.supercontig_64.66	5e-26	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15353	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-28	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]