PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HSF

Protein Properties

Length: 207aa MW: 24048.5 Da PI: 9.034

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g22230.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.7	1.8e-33	17	108	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y ++ed+++++++sw+++g++fvvl++ efa+++Lp+ F h nf+SFvRQLn+YgF+kv++++ weF ++ F+kg+kell++ Vang06g22230.1 17 FLLKTYMLVEDPTTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFVRQLNTYGFRKVRTSR---------WEFCNERFRKGEKELLCE 102 9***************************************************************99.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+rkks Vang06g22230.1 103 IRRKKS 108 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	9.5E-50	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	9.5E-36	14	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	6.39E-32	14	106	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.3E-17	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.3E-30	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-17	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-17	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEKGLLECVR KFSTAPFLLK TYMLVEDPTT NDVVSWNDDG TTFVVLQPAE FARDLLPTLF 60 NHCNFSSFVR QLNTYGFRKV RTSRWEFCNE RFRKGEKELL CEIRRKKSWV SKKQHGPQDS 120 DEDQRSLAST FSSNYAVLMH ENKRLKKENE VLHSELTTIN TKCRDLLDLV TKYSCAKAEG 180 LDHKPMLFRI TLEQVQGQTQ VKNNTK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5w_B	3e-23	14	106	1	104	Putative transcription factor
5d5x_B	3e-23	14	106	1	104	Putative transcription factor
5d5x_E	3e-23	14	106	1	104	Putative transcription factor
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g22230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017412864.1	1e-154	PREDICTED: heat stress transcription factor B-3-like
Swissprot	O22230	4e-60	HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBL	A0A0L9TUC2	1e-152	A0A0L9TUC2_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SU32	1e-152	A0A0S3SU32_PHAAN; Uncharacterized protein
STRING	XP_007145595.1	1e-103	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1592	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41690.1	2e-62	heat shock transcription factor B3

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]