 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang06g21080.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
B3 |
| Protein Properties |
Length: 195aa MW: 21616.2 Da PI: 9.6885 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang06g21080.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 103.7 | 9.6e-33 | 2 | 109 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f+k ltpsdv+k++rlv+pk++ae++ ++ + ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++
Vang06g21080.1 2 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgggggDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHR 96
99*****************************9977334447889************************************************887 PP
SSEE..EEEEE-S CS
B3 87 rsefelvvkvfrk 99
+ +l+++++r+
Vang06g21080.1 97 ADAHRLFIGWRRR 109
79999******98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0080113 | Biological Process | regulation of seed growth |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MFEKPLTPSD VGKLNRLVIP KQHAEKYFPL SGGGGGDSGE CKGLLLSFED ESGKCWRFRY 60
SYWNSSQSYV LTKGWSRYVK DKRLDAGDVV LFERHRADAH RLFIGWRRRR HGDTSPVHVS 120
GRAVGHGKSG DGSSKNEGGG ATGVGLGWTR GFYSAHPYPT HQQQLHNHQP LPYQYDCLHA 180
GCSISSIQIN NLSL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 9e-49 | 1 | 109 | 7 | 113 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 9e-49 | 1 | 109 | 7 | 113 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
