PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g20090.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 529aa    MW: 58027.2 Da    PI: 6.7813
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g20090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.21e-18102188186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L+ea++e+ ++l+rg+l++ +Weev+ ++  r +  ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+qle
  Vang06g20090.1 102 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAFVVseRCENQSKSVEQCKNKVDNLKKRYKLERQRMSSG-CISTSHWPWFKQLE 188
                     5*************************************666677899*************************9.99999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-19100190No hitNo description
Gene3DG3DSA:3.40.1160.106.9E-57238304IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.33E-48241299IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042547.61E-103243522No hitNo description
PfamPF006962.9E-19244501IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.33E-48338521IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.106.9E-57342521IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MASCDDDDDF SLLRDDNHHL HQPYAPHHHF SPSAVAVAPV PPKSVADDAD DYGNPFDDDG  60
GSEKRKDREE IGEGATSYGF NKRSKAPQSS AGSAEYRKDR EEWSDTAIVC LLEAYTEKFT  120
QLNRGNLRGR DWEEVAFVVS ERCENQSKSV EQCKNKVDNL KKRYKLERQR MSSGCISTSH  180
WPWFKQLEQI VGNSLPAKFS DEDKAVVSAG TSPRQSKRYG VATPSTGQVN NIRSKALTNL  240
RWRRVVFKIS GAALTGSDTC NMDPKVAMLV SREVAIASRL GVEVAIVVGG CNFFSGDAWV  300
NATGLERCTA YQVGEHPLPR SQGYKDILLR SGKYLLDALH MGSAYHFVAF SMMATVMNSI  360
LLQSTLEKMG VQTRVQTSIA MQEFAELYNR QRAIRHLEKG RVIIFGGISF GAGNPLFSTD  420
IAAALRASEP SAYISFNLAV NAEAVLKGTN VDGVYDCNSR DNNFTFEHIS FRELGSRGIT  480
SMDASALTLC KENAIPVVVF NLLEPGNISK ALCGEQVGTL IDQTGAVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-502345211239Uridylate kinase
3ek5_B3e-502345211239Uridylate kinase
3ek5_C3e-502345211239Uridylate kinase
3ek5_D3e-502345211239Uridylate kinase
3ek5_E3e-502345211239Uridylate kinase
3ek5_F3e-502345211239Uridylate kinase
3ek6_A3e-502345211239Uridylate kinase
3ek6_B3e-502345211239Uridylate kinase
3ek6_C3e-502345211239Uridylate kinase
3ek6_D3e-502345211239Uridylate kinase
3ek6_E3e-502345211239Uridylate kinase
3ek6_F3e-502345211239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g20090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414656.10.0PREDICTED: uridylate kinase
TrEMBLA0A0L9TVN70.0A0A0L9TVN7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3ST680.0A0A0S3ST68_PHAAN; Uncharacterized protein
STRINGXP_007145266.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein