PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g17510.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 315aa MW: 34924.7 Da PI: 10.5527

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g17510.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.4	2.2e-31	248	306	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+k Vang06g17510.1 248 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 306 99*********************9988**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.5E-17	199	244	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.5E-33	234	306	IPR003657	WRKY domain
PROSITE profile	PS50811	29.998	241	307	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-27	244	306	IPR003657	WRKY domain
SMART	SM00774	4.7E-38	246	306	IPR003657	WRKY domain
Pfam	PF03106	4.6E-27	248	305	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MVCGKHAGHK SQGKQSPLFH TFQSHNRGKK NLGFSTTKFV KANMEEVEQA NRAAVESCHR 60 VLSLLSQPRD QVQHRNLVVE TGDAVVKFKK VVSLLKSGLG HARVRKVKNP QVPFTHQSIF 120 LDNPNCKTNN HHSKNLQLFQ PSFPDNSIVE LGSTIKHSLS LAQPSLELSS NGSVANLDGS 180 AFHLIGAPHS SDQNSQQHKR KCSARGDEGS LKCGSSSRCH CSKKRKHRLK RSIKVPAISN 240 KLADIPPDDY SWRKYGQKPI KGSPHPRGYY KCSSMRGCPA RKHVERCLEE PTMLIVTYEG 300 EHNHPKLPTQ STNA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	239	308	7	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g17510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014629302.1	1e-129	LOW QUALITY PROTEIN: probable WRKY transcription factor 21
Swissprot	Q93WU6	8e-89	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A151S345	1e-169	A0A151S345_CAJCA; Putative WRKY transcription factor 39
STRING	GLYMA03G31630.1	1e-124	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2637	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-67	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]