PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g16610.3 | ||||||||
Common Name | LR48_Vigan02g127900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 326aa MW: 37730.7 Da PI: 8.0168 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.1e-08 | 118 | 159 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e l ++ +q+G++ W+ +a +g + + ++k+ w+ + Vang06g16610.3 118 KWTPEEYEFLRKVKEQHGSN-WRQVADALG--KNRIHVKDAWRRV 159 8*****************99.********9..6788899988865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-6 | 42 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0022 | 42 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.31 | 45 | 111 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 9.282 | 113 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0029 | 115 | 162 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.58E-10 | 117 | 177 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-10 | 118 | 170 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.6E-12 | 119 | 177 | No hit | No description |
PROSITE profile | PS50090 | 7.654 | 161 | 230 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.1E-4 | 165 | 232 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.21E-4 | 168 | 227 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-8 | 171 | 232 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.47E-8 | 210 | 290 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.188 | 232 | 285 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-4 | 233 | 286 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 12 | 236 | 287 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MTKKETKADN DESPNPACSG LSKPKRVTFS DQVEVCCDGL VRGKRFTLEE DEQIKSAVYN 60 FIESRGLGDE GLDMVLHCSS HPEVRSCWNE IAAALPHRPK NSVYTRAHIL FERSEMRKWT 120 PEEYEFLRKV KEQHGSNWRQ VADALGKNRI HVKDAWRRVK LRNTNKGRWT QEEYQKLFDL 180 VNLDLRVRAS QGYRKSKHGM LRDNIGWEAI GDKLVTRTSV SCCHKWYDKL RSPMVATGAW 240 SDTDDYRLVD ALYNLDACCT EEVDWDDLLE HRTGEACRKR WNQIVRYIGD HGGKSFSEQV 300 EILAKRYCPN LLEVREAFDA KPLVC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g16610.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412318.1 | 0.0 | PREDICTED: RNA polymerase I termination factor-like | ||||
TrEMBL | A0A0L9TY64 | 0.0 | A0A0L9TY64_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA13G19060.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-120 | MYB_related family protein |
Publications ? help Back to Top | |||
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