PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g16610.2
Common NameLR48_Vigan02g127900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 405aa    MW: 47437.9 Da    PI: 8.2986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g16610.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08197238347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE e l ++ +q+G++ W+ +a  +g  + + ++k+ w+ +
   Vang06g16610.2 197 KWTPEEYEFLRKVKEQHGSN-WRQVADALG--KNRIHVKDAWRRV 238
                      8*****************99.********9..6788899988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.542117190IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.0E-6119185IPR009057Homeodomain-like
SMARTSM007170.0022121192IPR001005SANT/Myb domain
PROSITE profilePS512949.282192243IPR017930Myb domain
SMARTSM007170.0029194241IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-9196256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-10197249IPR009057Homeodomain-like
PfamPF139212.2E-12198256No hitNo description
PROSITE profilePS500907.654240309IPR017877Myb-like domain
SMARTSM007179.1E-4244311IPR001005SANT/Myb domain
CDDcd001670.00145247306No hitNo description
Gene3DG3DSA:1.10.10.604.0E-8250311IPR009057Homeodomain-like
SuperFamilySSF466898.79E-8289368IPR009057Homeodomain-like
PROSITE profilePS500908.188311364IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.2E-4312365IPR009057Homeodomain-like
SMARTSM0071712315366IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
LSEEGKSKEY NEFQNNDGED DAQGRKGEKK KYSKQSKSEE DNVFERNEGE VDAKGKKKKK  60
RKHGEDGKSK EYNEFENNED EDDAQGKKRK KKKMSKENKS KEYNVFQRNE GEDDFEGRKI  120
RGKRFTLEED EQIKSAVYNF IESRGLGDEG LDMVLHCSSH PEVRSCWNEI AAALPHRPKN  180
SVYTRAHILF ERSEMRKWTP EEYEFLRKVK EQHGSNWRQV ADALGKNRIH VKDAWRRVKL  240
RNTNKGRWTQ EEYQKLFDLV NLDLRVRASQ GYRKSKHGML RDNIGWEAIG DKLVTRTSVS  300
CCHKWYDKLR SPMVATGAWS DTDDYRLVDA LYNLDACCTE EVDWDDLLEH RTGEACRKRW  360
NQIVRYIGDH GGKSFSEQVE ILAKRYCPNL LEVREAFDAK PLVC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661KKKKRK
28690KKRKK
38692KKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g16610.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412318.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A0L9TY640.0A0A0L9TY64_PHAAN; Uncharacterized protein
STRINGXP_007144424.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-116MYB_related family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]