PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g16610.1
Common NameLR48_Vigan02g127900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 451aa    MW: 52455.4 Da    PI: 7.6646
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g16610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08243284347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE e l ++ +q+G++ W+ +a  +g  + + ++k+ w+ +
   Vang06g16610.1 243 KWTPEEYEFLRKVKEQHGSN-WRQVADALG--KNRIHVKDAWRRV 284
                      8*****************99.********9..6788899988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0022167238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-6167231IPR009057Homeodomain-like
PROSITE profilePS500904.31170236IPR017877Myb-like domain
PROSITE profilePS512949.282238289IPR017930Myb domain
SMARTSM007170.0029240287IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-9242302IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-10243298IPR009057Homeodomain-like
PfamPF139212.6E-12244302No hitNo description
PROSITE profilePS500907.654286355IPR017877Myb-like domain
SMARTSM007179.1E-4290357IPR001005SANT/Myb domain
CDDcd001670.00102293352No hitNo description
Gene3DG3DSA:1.10.10.601.1E-9299408IPR009057Homeodomain-like
SuperFamilySSF466891.03E-7335414IPR009057Homeodomain-like
PROSITE profilePS500908.188357410IPR017877Myb-like domain
SMARTSM0071712361412IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
LSEEGKSKEY NEFQNNDGED DAQGRKGEKK KYSKQSKSEE DNVFERNEGE VDAKGKKKKK  60
RKHGEDGKSK EYNEFENNED EDDAQGKKRK KKKMSKENKS KEYNVFQRNE GEDDFEDNKS  120
KNENMMTKKE TKADNDESPN PACSGLSKPK RVTFSDQVEV CCDGLVRGKR FTLEEDEQIK  180
SAVYNFIESR GLGDEGLDMV LHCSSHPEVR SCWNEIAAAL PHRPKNSVYT RAHILFERSE  240
MRKWTPEEYE FLRKVKEQHG SNWRQVADAL GKNRIHVKDA WRRVKLRNTN KGRWTQEEYQ  300
KLFDLVNLDL RVRASQGYRK SKHGMLRDNI GWEAIGDKLV TRTSVSCCHK WYDKLRSPMV  360
ATGAWSDTDD YRLVDALYNL DACCTEEVDW DDLLEHRTGE ACRKRWNQIV RYIGDHGGKS  420
FSEQVEILAK RYCPNLLEVR EAFDAKPLVC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661KKKKRK
28690KKRKK
38692KKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g16610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412318.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A0L9TY640.0A0A0L9TY64_PHAAN; Uncharacterized protein
STRINGXP_007144424.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-119MYB_related family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]