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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g16610.1 | ||||||||
Common Name | LR48_Vigan02g127900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 451aa MW: 52455.4 Da PI: 7.6646 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.3e-08 | 243 | 284 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e l ++ +q+G++ W+ +a +g + + ++k+ w+ + Vang06g16610.1 243 KWTPEEYEFLRKVKEQHGSN-WRQVADALG--KNRIHVKDAWRRV 284 8*****************99.********9..6788899988865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0022 | 167 | 238 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-6 | 167 | 231 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.31 | 170 | 236 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 9.282 | 238 | 289 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0029 | 240 | 287 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.25E-9 | 242 | 302 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-10 | 243 | 298 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.6E-12 | 244 | 302 | No hit | No description |
PROSITE profile | PS50090 | 7.654 | 286 | 355 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.1E-4 | 290 | 357 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00102 | 293 | 352 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 299 | 408 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-7 | 335 | 414 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.188 | 357 | 410 | IPR017877 | Myb-like domain |
SMART | SM00717 | 12 | 361 | 412 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
LSEEGKSKEY NEFQNNDGED DAQGRKGEKK KYSKQSKSEE DNVFERNEGE VDAKGKKKKK 60 RKHGEDGKSK EYNEFENNED EDDAQGKKRK KKKMSKENKS KEYNVFQRNE GEDDFEDNKS 120 KNENMMTKKE TKADNDESPN PACSGLSKPK RVTFSDQVEV CCDGLVRGKR FTLEEDEQIK 180 SAVYNFIESR GLGDEGLDMV LHCSSHPEVR SCWNEIAAAL PHRPKNSVYT RAHILFERSE 240 MRKWTPEEYE FLRKVKEQHG SNWRQVADAL GKNRIHVKDA WRRVKLRNTN KGRWTQEEYQ 300 KLFDLVNLDL RVRASQGYRK SKHGMLRDNI GWEAIGDKLV TRTSVSCCHK WYDKLRSPMV 360 ATGAWSDTDD YRLVDALYNL DACCTEEVDW DDLLEHRTGE ACRKRWNQIV RYIGDHGGKS 420 FSEQVEILAK RYCPNLLEVR EAFDAKPLVC * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 61 | KKKKRK |
2 | 86 | 90 | KKRKK |
3 | 86 | 92 | KKRKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g16610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412318.1 | 0.0 | PREDICTED: RNA polymerase I termination factor-like | ||||
TrEMBL | A0A0L9TY64 | 0.0 | A0A0L9TY64_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144424.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-119 | MYB_related family protein |
Publications ? help Back to Top | |||
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