PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 279aa MW: 31573.1 Da PI: 5.9038

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g15810.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.4	1.8e-19	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W++ ar g++Rt+k+c++rw++yl Vang06g15810.1 28 KGSWTEEEDSLLINYVNLHGEGHWNSLARSAGLKRTGKSCRLRWLNYL 75 799*******************************************97 PP
2	Myb_DNA-binding	46.7	7.3e-15	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Vang06g15810.1 81 RGNITLQEQLLILELHSRWGNR-WAKIAEQLP-GRTDNEIKNYWRT 124 7899****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.295	23	79	IPR017930	Myb domain
SuperFamily	SSF46689	2.81E-30	26	122	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-16	27	77	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-17	28	75	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-22	29	82	IPR009057	Homeodomain-like
CDD	cd00167	1.59E-12	30	75	No hit	No description
PROSITE profile	PS51294	18.03	80	130	IPR017930	Myb domain
SMART	SM00717	3.1E-13	80	128	IPR001005	SANT/Myb domain
Pfam	PF00249	6.9E-14	81	124	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-21	83	128	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
LYIGAMTSLS DSQLSATYGS EEEFAIKKGS WTEEEDSLLI NYVNLHGEGH WNSLARSAGL 60 KRTGKSCRLR WLNYLRPNVR RGNITLQEQL LILELHSRWG NRWAKIAEQL PGRTDNEIKN 120 YWRTRVLKQA KQLKCDVNSK QFRDAVRFVW MPRLMERIQA SSGNVYSSYG HGQTTLCNTQ 180 THGESSGVNP MMFSESSMIS SYSSGVDVQP PSLSDASTTS SCNLMGDGSC SSESVEKGWQ 240 QWDYSDLQAF EPNHGFGDAD LWTDENMWFL QQHLADDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-24	4	122	3	120	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269\|PubMed:22301384}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g15810.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269\|PubMed:22301384}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413106.1	0.0	PREDICTED: transcription factor MYB108-like
Swissprot	Q10MB4	3e-78	MYB2_ORYSJ; Transcription factor MYB2
TrEMBL	A0A0L9TXN4	0.0	A0A0L9TXN4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SQZ3	0.0	A0A0S3SQZ3_PHAAN; Uncharacterized protein
STRING	XP_007145122.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF875	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	2e-70	myb domain protein 78

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Chen X, et al. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant Cell Physiol., 2014. 55(3): p. 604-19 [PMID:24399239] Lv Y, et al. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant Cell Environ., 2016. 39(3): p. 556-70 [PMID:26381647] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]