PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 726aa MW: 78463 Da PI: 6.7231

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g15210.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.7	3.3e-16	469	515	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Vang06g15210.2 469 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-20	462	525	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-20	462	523	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.349	465	514	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.63E-17	468	519	No hit	No description
Pfam	PF00010	1.1E-13	469	515	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-17	471	520	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009704	Biological Process	de-etiolation
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0031539	Biological Process	positive regulation of anthocyanin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MPLYELYRLA REKLGTENNS TRASDQCSSP ENDFFELVWE NGQISSQGQS SKVRRSPSCK 60 SLPSHCLPSH SPKGRDKDVG YGANRIGKFR DLDSGLNEIS MSVPSREVDF CQDEDVLPWF 120 DYPTMDGSLQ HDYGSDFLPA PTSFTLSDKK SNSSMALRDS HKTSEEQGNA FKDSSAEQVG 180 TVEPKASTNQ LYPPSLHHCQ TSFVSSRSRT SDITENNNTS NANQDATYGE ITNFLSSSSD 240 FSSPKGKKQE PPLPGNGSSS TIMNFSHFAR PAAKVRANLQ NIGLKSGLSS ARSDSMEIKN 300 KDAAATSSNP PESIVIDSSG ECPKELTMHC QQNVDQSKTD LNTSLLKAVE QNAVLSKQSE 360 TACNESSTKI DQIADQVLGD SGAKGQTTAE KSMEAAVASS SVCSGNGADR GSDEPNKNLK 420 RKRKDTDDSE CHSEKTFYMK DAEEESAGVK KASGGRGGTG SKRTRAAEVH NLSERRRRDR 480 INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGLYMP PMMLPAGMQH 540 MHAPHMAPFS PMGVGMHMGY GMGYGVGMPD MNGGSSRFPM IQVPQMQGNH IPVAQMSGPT 600 ALHEMAGSNL PRLGLPGQVH PMPMPRAPML PFSGGPVMNS SALGLHACGL SGLVETVDTA 660 SASGLKDQMP NVGPLVKQST GGRDSTSQMP TQKFLPNLLM HLLPWTELKS EKPIALYFCP 720 CALCY*

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MPLYELYRLA REKLGTENNS TRASDQCSSP ENDFFELVWE NGQISSQGQS SKVRRSPSCK  60
SLPSHCLPSH SPKGRDKDVG YGANRIGKFR DLDSGLNEIS MSVPSREVDF CQDEDVLPWF  120
DYPTMDGSLQ HDYGSDFLPA PTSFTLSDKK SNSSMALRDS HKTSEEQGNA FKDSSAEQVG  180
TVEPKASTNQ LYPPSLHHCQ TSFVSSRSRT SDITENNNTS NANQDATYGE ITNFLSSSSD  240
FSSPKGKKQE PPLPGNGSSS TIMNFSHFAR PAAKVRANLQ NIGLKSGLSS ARSDSMEIKN  300
KDAAATSSNP PESIVIDSSG ECPKELTMHC QQNVDQSKTD LNTSLLKAVE QNAVLSKQSE  360
TACNESSTKI DQIADQVLGD SGAKGQTTAE KSMEAAVASS SVCSGNGADR GSDEPNKNLK  420
RKRKDTDDSE CHSEKTFYMK DAEEESAGVK KASGGRGGTG SKRTRAAEVH NLSERRRRDR  480
INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGLYMP PMMLPAGMQH  540
MHAPHMAPFS PMGVGMHMGY GMGYGVGMPD MNGGSSRFPM IQVPQMQGNH IPVAQMSGPT  600
ALHEMAGSNL PRLGLPGQVH PMPMPRAPML PFSGGPVMNS SALGLHACGL SGLVETVDTA  660
SASGLKDQMP NVGPLVKQST GGRDSTSQMP TQKFLPNLLM HLLPWTELKS EKPIALYFCP  720
CALCY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	473	478	ERRRRD

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00081	ChIP-seq	Transfer from AT1G09530	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g15210.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017415117.1	0.0	PREDICTED: transcription factor PIF3-like isoform X1
Refseq	XP_017415118.1	0.0	PREDICTED: transcription factor PIF3-like isoform X1
TrEMBL	A0A0L9TZ16	0.0	A0A0L9TZ16_PHAAN; Uncharacterized protein
STRING	XP_007145054.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-58	phytochrome interacting factor 3

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]