PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g14860.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 310aa    MW: 35341.1 Da    PI: 4.9883
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g14860.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.46.5e-102512842255
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Vang06g14860.2 251 WPYPTEEEKVQLSEMTGLEQKQINNWFINQRKRH 284
                     59*****************************885 PP

2ELK31.93e-11204225122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK+ LlrKY+gyL+sL++EF+
  Vang06g14860.2 204 ELKEILLRKYGGYLSSLRKEFL 225
                     9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-2061105IPR005540KNOX1
PfamPF037902.7E-2063104IPR005540KNOX1
SMARTSM012566.8E-25108159IPR005541KNOX2
PfamPF037912.0E-23111158IPR005541KNOX2
PROSITE profilePS5121311.086204224IPR005539ELK domain
PfamPF037892.0E-8204225IPR005539ELK domain
SMARTSM011883.7E-6204225IPR005539ELK domain
PROSITE profilePS5007112.86224287IPR001356Homeobox domain
SMARTSM003895.6E-13226291IPR001356Homeobox domain
SuperFamilySSF466891.75E-20226299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-28229289IPR009057Homeodomain-like
CDDcd000863.93E-12236288No hitNo description
PfamPF059203.4E-17244283IPR008422Homeobox KN domain
PROSITE patternPS000270262285IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
LGYISMENFY KLNSLLSCTE DVVRGVNVNV SAAAASELNL GLVANNFLQL EEPESSDMSE  60
RFIKTQIATH PLYPNLVSAY IECRKVGAPP ELASLLEEIA RESHPTHALR EIGDDPELDE  120
FMESYCEILH RYKQELSKPF NEATLFLCSI ESQLSNLCKG TLTLPLDNNR SDEAAGTSED  180
ELSWEKMEVM EGVESSGSRP GDQELKEILL RKYGGYLSSL RKEFLKKRKK GKLPKEARRI  240
LLDWWSTHYR WPYPTEEEKV QLSEMTGLEQ KQINNWFINQ RKRHWKPSED MRFAIMDGVS  300
GSAIVRGPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219228LRKEFLKKRK
2225229KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g14860.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0940971e-170BT094097.1 Soybean clone JCVI-FLGm-18M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412798.10.0PREDICTED: homeobox protein knotted-1-like 1 isoform X2
SwissprotQ9FP296e-94KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0S3SQR60.0A0A0S3SQR6_PHAAN; Uncharacterized protein
STRINGXP_007145002.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-80KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]