PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang06g14860.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 310aa MW: 35341.1 Da PI: 4.9883 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.4 | 6.5e-10 | 251 | 284 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ Vang06g14860.2 251 WPYPTEEEKVQLSEMTGLEQKQINNWFINQRKRH 284 59*****************************885 PP | |||||||
2 | ELK | 31.9 | 3e-11 | 204 | 225 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ LlrKY+gyL+sL++EF+ Vang06g14860.2 204 ELKEILLRKYGGYLSSLRKEFL 225 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.1E-20 | 61 | 105 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.7E-20 | 63 | 104 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.8E-25 | 108 | 159 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.0E-23 | 111 | 158 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.086 | 204 | 224 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.0E-8 | 204 | 225 | IPR005539 | ELK domain |
SMART | SM01188 | 3.7E-6 | 204 | 225 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.86 | 224 | 287 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-13 | 226 | 291 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-20 | 226 | 299 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-28 | 229 | 289 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.93E-12 | 236 | 288 | No hit | No description |
Pfam | PF05920 | 3.4E-17 | 244 | 283 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 262 | 285 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
LGYISMENFY KLNSLLSCTE DVVRGVNVNV SAAAASELNL GLVANNFLQL EEPESSDMSE 60 RFIKTQIATH PLYPNLVSAY IECRKVGAPP ELASLLEEIA RESHPTHALR EIGDDPELDE 120 FMESYCEILH RYKQELSKPF NEATLFLCSI ESQLSNLCKG TLTLPLDNNR SDEAAGTSED 180 ELSWEKMEVM EGVESSGSRP GDQELKEILL RKYGGYLSSL RKEFLKKRKK GKLPKEARRI 240 LLDWWSTHYR WPYPTEEEKV QLSEMTGLEQ KQINNWFINQ RKRHWKPSED MRFAIMDGVS 300 GSAIVRGPM* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 219 | 228 | LRKEFLKKRK |
2 | 225 | 229 | KKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00670 | PBM | Transfer from GRMZM2G087741 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang06g14860.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT094097 | 1e-170 | BT094097.1 Soybean clone JCVI-FLGm-18M11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412798.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 isoform X2 | ||||
Swissprot | Q9FP29 | 6e-94 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A0S3SQR6 | 0.0 | A0A0S3SQR6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145002.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-80 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|