PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g14860.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 319aa    MW: 36360.3 Da    PI: 4.9146
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g14860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.46.7e-102602932255
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Vang06g14860.1 260 WPYPTEEEKVQLSEMTGLEQKQINNWFINQRKRH 293
                     59*****************************885 PP
2ELK31.83.1e-11213234122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK+ LlrKY+gyL+sL++EF+
  Vang06g14860.1 213 ELKEILLRKYGGYLSSLRKEFL 234
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-2061105IPR005540KNOX1
PfamPF037902.8E-2063104IPR005540KNOX1
SMARTSM012566.8E-25108159IPR005541KNOX2
PfamPF037912.0E-23111158IPR005541KNOX2
SMARTSM011883.7E-6213234IPR005539ELK domain
PfamPF037892.0E-8213234IPR005539ELK domain
PROSITE profilePS5121311.086213233IPR005539ELK domain
PROSITE profilePS5007112.86233296IPR001356Homeobox domain
SuperFamilySSF466891.84E-20235308IPR009057Homeodomain-like
SMARTSM003895.6E-13235300IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-28238298IPR009057Homeodomain-like
CDDcd000863.63E-12245297No hitNo description
PfamPF059203.5E-17253292IPR008422Homeobox KN domain
PROSITE patternPS000270271294IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
LGYISMENFY KLNSLLSCTE DVVRGVNVNV SAAAASELNL GLVANNFLQL EEPESSDMSE  60
RFIKTQIATH PLYPNLVSAY IECRKVGAPP ELASLLEEIA RESHPTHALR EIGDDPELDE  120
FMESYCEILH RYKQELSKPF NEATLFLCSI ESQLSNLCKG TLTLPLDNNR SGEDQPIALF  180
YEAAGTSEDE LSWEKMEVME GVESSGSRPG DQELKEILLR KYGGYLSSLR KEFLKKRKKG  240
KLPKEARRIL LDWWSTHYRW PYPTEEEKVQ LSEMTGLEQK QINNWFINQR KRHWKPSEDM  300
RFAIMDGVSG SAIVRGPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228237LRKEFLKKRK
2234238KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g14860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0940971e-156BT094097.1 Soybean clone JCVI-FLGm-18M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412797.10.0PREDICTED: homeobox protein knotted-1-like 1 isoform X1
SwissprotQ9FP297e-91KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0S3SQR60.0A0A0S3SQR6_PHAAN; Uncharacterized protein
STRINGXP_007145002.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-78KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]