PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g12210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 24215.8 Da PI: 4.4093 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.7e-17 | 18 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w++ Vang06g12210.1 18 RGNFTSEEEETIIKLHEMLGNR-WSAIAAKLP-GRTDNEIKNVWHTN 62 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.887 | 13 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.14E-14 | 13 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 13 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 17 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 18 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-11 | 20 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAMAIGVPSQ NKQPDIKRGN FTSEEEETII KLHEMLGNRW SAIAAKLPGR TDNEIKNVWH 60 TNLKKRLLNS NSRRVTKPKI KRSDSNSSII TESEAANFNF REMDSTSACT TSSDFSSVTV 120 GESKNIKCED IESLETMPVI DESFWSEPAI DEAPSMSSQS MTISNQMPFQ YPFTNYEETF 180 PQSHAYDSNF DDGMDFWYDI FTRTADSTEL PEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-12 | 14 | 67 | 55 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g12210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412555.1 | 1e-146 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A0L9TZH8 | 1e-145 | A0A0L9TZH8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SPS1 | 1e-145 | A0A0S3SPS1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143866.1 | 1e-130 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 8e-41 | myb domain protein 15 |