PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ZF-HD

Protein Properties

Length: 200aa MW: 22489.4 Da PI: 8.4965

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g11840.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.9	1.9e-31	18	72	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY eClkNhAas+Gg+a+DGCgEf+++ geegt +al+C+AC+CHRnFHR+e e+ Vang06g11840.1 18 IRYTECLKNHAASIGGNATDGCGEFIAD-GEEGTLEALRCSACNCHRNFHRKEIES 72 79***********************8.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.8E-29	18	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.9E-29	19	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-20	20	71	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.223	20	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.2E-28	122	193	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-17	126	193	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.2E-26	132	189	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MESSNLHADR RADRKIIIRY TECLKNHAAS IGGNATDGCG EFIADGEEGT LEALRCSACN 60 CHRNFHRKEI ESSDSYITPL MIIPDTTQIG PILAQLSPHK SGSISPSDVS DEKDCENGMT 120 KEVGNNATEK VKKRFRTKFT QEQKEKMFLF AERAGWRIQK LDESVVQNFC QEIGIKRRVL 180 KVWIHNNKNT FAKRNPSTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-24	133	190	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g11840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414200.1	1e-149	PREDICTED: zinc-finger homeodomain protein 3-like
Swissprot	O64722	5e-61	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A0L9TYJ6	1e-147	A0A0L9TYJ6_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SQ03	1e-147	A0A0S3SQ03_PHAAN; Uncharacterized protein
STRING	XP_007143929.1	1e-130	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-60	homeobox protein 21

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]