 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang06g11510.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
C3H |
| Protein Properties |
Length: 356aa MW: 39334.4 Da PI: 8.0441 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang06g11510.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 36 | 1.2e-11 | 67 | 93 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++ rtG C++G++C+F+H+p
Vang06g11510.1 67 PGEPDCSYYIRTGLCRFGATCRFNHPP 93
5789*********************97 PP
|
| 2 | zf-CCCH | 31.4 | 3.2e-10 | 98 | 117 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS
zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27
++++tGtCk+G++CkF+H++
Vang06g11510.1 98 YYLKTGTCKFGATCKFHHPK 117
8*****************96 PP
|
| 3 | zf-CCCH | 38.3 | 2.2e-12 | 140 | 163 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
++C +++rtG+Ck+G++CkF+H++
Vang06g11510.1 140 PECTYYLRTGQCKFGNTCKFHHPQ 163
79********************97 PP
|
| 4 | zf-CCCH | 38.4 | 2.1e-12 | 298 | 323 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C+f+++tG Ck+G+ C+F+H+
Vang06g11510.1 298 PGQPECQFYMKTGDCKFGAVCRFHHP 323
5789*********************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.587 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.1E-5 | 66 | 93 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.2E-8 | 68 | 93 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.4E-5 | 71 | 94 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 72 | 92 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.026 | 94 | 117 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.8E-8 | 98 | 117 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 10.474 | 98 | 118 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 98 | 117 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.676 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.0E-5 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-6 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.8E-10 | 140 | 163 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 142 | 162 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.436 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.4E-6 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.8E-9 | 299 | 323 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-5 | 301 | 326 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.9E-5 | 303 | 325 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MRIERLMNGE EEAQRLVFVA TVCIDDVASV SLTSCCSRVY DVVSDSLWMM NLRSGETMDS 60
GAYPERPGEP DCSYYIRTGL CRFGATCRFN HPPNRKLYYL KTGTCKFGAT CKFHHPKDQA 120
GIAGRVALNT LGYPLRPNDP ECTYYLRTGQ CKFGNTCKFH HPQPSNMMLS LQDSSVYPTV 180
HSPTTPGQQS YAGGITNWSR ASYIPSPRWQ GPSSYAPLIL PQGVVSVPGW SAYGGQVGSI 240
STSDSHQQVM RNGQTYGTSR QGELANAGSH GAYSQFRSGT VPVGFYALQR ENIFPERPGQ 300
PECQFYMKTG DCKFGAVCRF HHPSERLIPA PDCVLSPMGL PLRPDFEFDN NLIQI*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
