PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g10530.1 | ||||||||
Common Name | LR48_Vigan10g095800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GeBP | ||||||||
Protein Properties | Length: 359aa MW: 40102.4 Da PI: 4.6036 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 121.2 | 5.2e-38 | 97 | 192 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrlw++eDei lLqG++d++a++g+s ++d+ fy+++k+++++ ++k+qlveK+rrLKkK+++ +k+++gke+sf+++hd+ +fe+s++iW Vang06g10530.1 97 LFQRLWTDEDEIGLLQGFLDYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLTKINDGKEFSFKSPHDRATFEISRRIW 191 79********************************************************************************************* PP DUF573 97 g 97 Vang06g10530.1 192 S 192 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.9E-34 | 98 | 192 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MASDLNDTVF PEEDLDDDDE TQEDEEEDDE DDDVLDDEET EPSHSVLAAI TLAAPASAVS 60 QTLGTASTAI VVADSSPKRP RTEQVEEKKA LDDSRRLFQR LWTDEDEIGL LQGFLDYTAQ 120 RGSSHHNDTA LFYDQIKSKL QLGFNKNQLV EKLRRLKKKY RNVLTKINDG KEFSFKSPHD 180 RATFEISRRI WSNTAPITGP VEDDDEINPN PNLIPNPNFS HSAKTSLSRK RSRSRPKDSN 240 CIGNSNNNSN KDNENCNHRH SLQGLIEETV RSCVSPVLKE LVSGGRGFGV GGGFPLNSLQ 300 MQMPMALSSL NLGIGEMVMD EKWRKQQILE LEVYSKRLEL VQNEIKVALE ELRSSGGG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 82 | PKRPRTE |
2 | 229 | 234 | KRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g10530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438647.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
Swissprot | F4K5T4 | 5e-87 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | A0A0L9VJ44 | 0.0 | A0A0L9VJ44_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144806.1 | 1e-168 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 1e-55 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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