PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 379aa MW: 41806.7 Da PI: 8.1431

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g09200.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.3	2.2e-19	212	261	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+ge Vang06g09200.2 212 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 261 8****9.******955...5**********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.08E-30	210	270	No hit	No description
SuperFamily	SSF54171	4.05E-22	211	269	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.049	211	268	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.4E-31	211	269	IPR001471	AP2/ERF domain
SMART	SM00380	2.0E-33	211	274	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-10	212	223	IPR001471	AP2/ERF domain
Pfam	PF00847	9.7E-12	212	261	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-10	234	250	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
METGSKFLDN AMIGVSHSLT ASNHLHVLRS GENSSITSSQ QLLSCSNSTS MKEEAPLATW 60 ISHIPEKFNG PQDIKNVRER NRSNSIFPAS GTKNSSIPLN LLETLPPLTM APCFDEPVAS 120 LASSSAPPNF PNLTLVLQEP SMVYSSSSNM KSGEVMSVTS NPTYQVPHFG QNQHQGCSDA 180 HKTNKNLKSF NENWLSSTRT QPMKYGGRGK LFKGVRQRHW GKWVAEIRLP RNRTRVWLGT 240 FDTAEDAAIA YDTAAYILRG EYAQLNFPDL KHVIQANSLN GTTAALVEAK LQAISQGVSS 300 HRKPTDSPAG LSNKHTDENG KLKSTNDKNS TMKEWQFDNT EKSKSIHHDI SDVETFQLSR 360 MPSLDMDSIW DELLVSNS*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

METGSKFLDN AMIGVSHSLT ASNHLHVLRS GENSSITSSQ QLLSCSNSTS MKEEAPLATW  60
ISHIPEKFNG PQDIKNVRER NRSNSIFPAS GTKNSSIPLN LLETLPPLTM APCFDEPVAS  120
LASSSAPPNF PNLTLVLQEP SMVYSSSSNM KSGEVMSVTS NPTYQVPHFG QNQHQGCSDA  180
HKTNKNLKSF NENWLSSTRT QPMKYGGRGK LFKGVRQRHW GKWVAEIRLP RNRTRVWLGT  240
FDTAEDAAIA YDTAAYILRG EYAQLNFPDL KHVIQANSLN GTTAALVEAK LQAISQGVSS  300
HRKPTDSPAG LSNKHTDENG KLKSTNDKNS TMKEWQFDNT EKSKSIHHDI SDVETFQLSR  360
MPSLDMDSIW DELLVSNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-21	207	268	1	63	ATERF1
3gcc_A	5e-21	207	268	1	63	ATERF1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g09200.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435506.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBL	A0A0L9VBG0	0.0	A0A0L9VBG0_PHAAN; Uncharacterized protein
STRING	XP_007144182.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13620.1	5e-48	ERF family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]