PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09200.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 401aa    MW: 44408.9 Da    PI: 8.8548
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19234283356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +kGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  Vang06g09200.1 234 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 283
                     8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-30232292No hitNo description
SMARTSM003802.0E-33233296IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-22233291IPR016177DNA-binding domain
PROSITE profilePS5103222.049233290IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-31233291IPR001471AP2/ERF domain
PfamPF008471.1E-11234283IPR001471AP2/ERF domain
PRINTSPR003675.8E-10234245IPR001471AP2/ERF domain
PRINTSPR003675.8E-10256272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MKGTFPKKEI FTQKKFSTCL QEMETGSKFL DNAMIGVSHS LTASNHLHVL RSGENSSITS  60
SQQLLSCSNS TSMKEEAPLA TWISHIPEKF NGPQDIKNVR ERNRSNSIFP ASGTKNSSIP  120
LNLLETLPPL TMAPCFDEPV ASLASSSAPP NFPNLTLVLQ EPSMVYSSSS NMKSGEVMSV  180
TSNPTYQVPH FGQNQHQGCS DAHKTNKNLK SFNENWLSST RTQPMKYGGR GKLFKGVRQR  240
HWGKWVAEIR LPRNRTRVWL GTFDTAEDAA IAYDTAAYIL RGEYAQLNFP DLKHVIQANS  300
LNGTTAALVE AKLQAISQGV SSHRKPTDSP AGLSNKHTDE NGKLKSTNDK NSTMKEWQFD  360
NTEKSKSIHH DISDVETFQL SRMPSLDMDS IWDELLVSNS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21229290163ATERF1
3gcc_A4e-21229290163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435506.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A0L9VBG00.0A0A0L9VBG0_PHAAN; Uncharacterized protein
STRINGXP_007144182.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-47ERF family protein