PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08560.1
Common NameLR48_Vigan02g208500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 587aa    MW: 65083.4 Da    PI: 6.7211
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.56.6e-912305852373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+e+A+a+s++ +e a+++          ++++ qR + +++ AL++r+++     ++   p + +e    e++ +++l++e s +++++ +
  Vang06g08560.1 230 IQSLTEVAKAISEERFEVATQI--------RFSQNSDQRFVNCMVSALKSRMSH-----AEY--PPPVEELFGREHAESTQLLFEHSLFFRVALM 309
                     5778888888888888888876........2345678****************9.....322..3333334599999****************** PP

            GRAS  97 taNqaIleav.ege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +aN aIle++ + +    ++ ++Dfdi++G Q+++Ll++L+ R++g p  ++i +v +++    e++++ g  L ++Ae+lg+ fef+v +++r+
  Vang06g08560.1 310 VANIAILESAfDDKtqnPKLCVVDFDIGNGKQYASLLHELSLRRKGYPaVVKIIAVTENS--ADERMSSAGVMLGRLAEQLGIGFEFKV-LTQRI 401
                     *******9752444555899*********************999776659********55..999************************.699** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     ++l+ e+L ++ +EalaVn++++l++++desvs+e++rde+L+ vk l P+vv++veqe+++n+++F++r++e++ yy alfdsle+++ re+++
  Vang06g08560.1 402 AELTRESLGCEADEALAVNFAFRLYKIPDESVSTENPRDELLRRVKALAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMTRENSW 496
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     rik+E+  l+r+i n vaceg+er+er+e ++kWr+r+++aGF+  pls+++a+++k  l   + +  +v+ e+g +++gW++r+L+++SaW
  Vang06g08560.1 497 RIKMEEG-LSRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGEN-R-VTVKVEKGGICFGWMGRTLTVASAW 585
                     *******.****************************************************9998.4.89*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.22181568IPR005202Transcription factor GRAS
PfamPF035142.3E-88230585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MSPPGFPAAG PSDFYGGATG FPTQSMAVTP TIDNHSATTH HPLYRSQPSI MLHPSSNIPK  60
HQTSSLIGKR TLAEFQTHNL TNTISNNLLV SNNNNQLLTN YQFRSPELAA LPSHRYGASL  120
LHHIRPNALN PQPVTSSILS HTNFSPVQSR LTATLESEKN FIDHRLQELE KELLEDNDDD  180
QSDAVSVVTT SEWSHTIQNL ITPPKRASSS PSSSTTTTSS NSSVESINVI QSLTEVAKAI  240
SEERFEVATQ IRFSQNSDQR FVNCMVSALK SRMSHAEYPP PVEELFGREH AESTQLLFEH  300
SLFFRVALMV ANIAILESAF DDKTQNPKLC VVDFDIGNGK QYASLLHELS LRRKGYPAVV  360
KIIAVTENSA DERMSSAGVM LGRLAEQLGI GFEFKVLTQR IAELTRESLG CEADEALAVN  420
FAFRLYKIPD ESVSTENPRD ELLRRVKALA PRVVTLVEQE SNTNTAPFVA RVAESCAYYG  480
ALFDSLETTM TRENSWRIKM EEGLSRKIAN TVACEGRERV ERCEVFGKWR ARMDMAGFRL  540
KPLSQRVAES IKERLGGENR VTVKVEKGGI CFGWMGRTLT VASAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-342265851374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g08560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413373.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-131SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0L9TZG30.0A0A0L9TZG3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SN640.0A0A0S3SN64_PHAAN; Uncharacterized protein
STRINGXP_007143458.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-120SCARECROW-like 8
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]