PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g07530.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 270aa MW: 31279.4 Da PI: 8.5891

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g07530.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.2	1.6e-26	58	152	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d Vang06g07530.1 58 KWTDKMVRLLITAVSYIGEDVTVDGggsgrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLD 152 7*************99999975445567778888********************************************5689888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-23	56	146	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGTLQNCDQT ISMTEFSKEN RSKNSASEED EPSFTEDGVD CHHEASRGKK GSPWQRVKWT 60 DKMVRLLITA VSYIGEDVTV DGGGSGRRKF AVLQKKGKWK SVSKVMAERG YHVSPQQCED 120 KFNDLNKRYK KLNDMLGRGT SCQVVENPAL LDVIDFLSDK EKDDDYNRSS YPHGQMVQSD 180 VNQGLPESMR AAWLQKQWVE SRSLQLEEQK IQIQVEMLEL EKQRFKWQRF SKKKDRELEK 240 LSLENERMKL ENERIALELK RKEMSTGFK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g07530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014514434.1	1e-116	uncharacterized protein LOC106772512
TrEMBL	A0A2P5YI90	1e-142	A0A2P5YI90_GOSBA; Uncharacterized protein
STRING	GLYMA20G30630.1	1e-109	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24338	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-81	sequence-specific DNA binding transcription factors