PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g07290.1

Common Name

LR48_Vigan02g190100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 1632aa MW: 177675 Da PI: 5.9992

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g07290.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	763	804	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT++E e++++ ++ +G++ +++Ia+ + ++t +c+++++k Vang06g07290.1 763 PWTPQEREIFLEKFAVFGKN-FRKIASFLD-HKTTADCVEFYYK 804 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33.2	1.2e-10	979	1017	4	44
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 WT +E +++av +G++ +++Iar++g +R+ +qck ++ Vang06g07290.1 979 WTDDEKAAFLQAVSSFGKD-FAKIARCVG-TRSQEQCKVFF 1017 ***************99.*****.******766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.54E-14	747	807	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.756	759	810	IPR017884	SANT domain
SMART	SM00717	6.1E-9	760	808	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-6	762	804	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-5	763	804	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.605	974	1025	IPR017884	SANT domain
SMART	SM00717	2.2E-8	975	1023	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.36E-10	977	1025	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-6	978	1017	IPR009057	Homeodomain-like
Pfam	PF00249	8.0E-9	978	1017	IPR001005	SANT/Myb domain
CDD	cd00167	7.58E-8	979	1017	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1632 aa Download sequence Send to blast
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSSHHRDF NRWGSAEFRR PPGHGYAISR 60 SSSDKILEED SRPSISRGDG KYGRSSRENR GPFGQRDWRG HSWEPSNGTV NLPRRPQDMN 120 NDQRAVDDAL GYSSHPHSDF VNSWDPHHLK DQHEKIGSVN GLGTGSRSDR ENSLGDWKPL 180 KWTRSGSLSS RGSGFSHSSS SRSMGAADSL EEKAELQQKS AAANESHSGE AAACATSSVP 240 SEDTASRKKP RLNWGEGLAK YEKKKVEVPD ASANKDGPVL SASITEPCNF LSTSLVDKSP 300 KVTGFSECAS PATPSSVACS SSPGMDDKLF GKTTNVDNDV SNLTCSPAPL SENNLQRFSF 360 NLEKFDMGSL NNLGSSIIEL VQSDDPTSVD SGPMRSNAIN KLLIWKADIS KVLEKTESEI 420 DLLENELKLL KSESGVTCPF AVSLGSQMVG SGEKSFEGHV GVSDQVTRPV PLNIVDDANT 480 EKVPFSTNLH SVHENVKEED IDSPGTATSK FVEPLPVSCG TGGGYVNFSQ DLDSVPSAAV 540 KYLIPCTARK DVIVPCVDGK TSLEVNDSMD ILCGTIISSN KECANKASEV FDNLLPKDCC 600 KIGRMGTSSD TCNQTLIREK FVEKKRLARF KERVIALKFR ALHHLWKEDM RLLSIRKCRP 660 KSHKKNELSV RTTCNGNQKN RSSIRSRFPF PAGNHLSLVP TSEIINFTSK LLSESQVKVQ 720 RNTLKMPALI LDEKEKTISK FVTSNGLVED PLAIEKERSL INPWTPQERE IFLEKFAVFG 780 KNFRKIASFL DHKTTADCVE FYYKNHKSDC FEKLKKQDVG KLGKTYSAKT DLVASGKKWN 840 RELNAASLEI LSAASLMAGG IAGNKKIRAG SSLLGGYGKV KTSRVEDFIE KSGSFDILGD 900 ERETAAAADV LAGICGSLSS EAIGSCITSS VDAVEGSRDR KFLKVNPLYK LPLTPDVTQD 960 VDDETCSDES CGEMDATDWT DDEKAAFLQA VSSFGKDFAK IARCVGTRSQ EQCKVFFSKG 1020 RKCLGLDLMR PIPENVGSPV NDDANGGESD TDDACVVETG SMVETEKSGT KTDEDLPFYG 1080 TKTFNDDSNP VQARNMSAEL DESKGTDGTE VDIEDANVVS DACAIDIDSK LGCDVSKFAL 1140 CGSVSGQTTV IMSNSTEIRR DKANKLKSVP DTSSEPCEIN SFVEDRMVVS EVSSGRPGNE 1200 LERQRVSSPR CHDDRDSKQE ADSGVIVDLK SPVHILSTMV NAPVSSFGNS CSGLTSSTEN 1260 KHVAIGQPHT SPLSVDEHQA SSNSFLQNTV ASDIQCEKTA SQDRLSSTCD IQVSTDEQPP 1320 ITGISSDHVD TGSILQGYPM QAPIKKEMND DMNCSSSAAE LHLLSQKIEQ PDDQTKKLQS 1380 LDSDKTSRNG DVKLFGKILT NPSSAQKHNV GAKGSEENGT HSHKFSKPSG VKFTGHNADG 1440 NLKILKFDCN DYVGLENVPM RSYGYWDGNR IQTGLSSLPD SAILLAKYPA AFSNYPTTPS 1500 AKLEQPSLQT FSKNNNEQLL NGSNAVIDYQ MFRRDGPKVQ PFMVDVKHCQ DVFSEMQRRN 1560 GFEAISSLQQ QSRGVMGMNG VGRPGILVGG SCSGVSDPVA AIKMHYSNSD KYGGQSGSIA 1620 REDESWGGKG D*

Sequence ? help Back to Top

Protein Sequence Length: 1632 aa Download sequence Send to blast

MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSSHHRDF NRWGSAEFRR PPGHGYAISR  60
SSSDKILEED SRPSISRGDG KYGRSSRENR GPFGQRDWRG HSWEPSNGTV NLPRRPQDMN  120
NDQRAVDDAL GYSSHPHSDF VNSWDPHHLK DQHEKIGSVN GLGTGSRSDR ENSLGDWKPL  180
KWTRSGSLSS RGSGFSHSSS SRSMGAADSL EEKAELQQKS AAANESHSGE AAACATSSVP  240
SEDTASRKKP RLNWGEGLAK YEKKKVEVPD ASANKDGPVL SASITEPCNF LSTSLVDKSP  300
KVTGFSECAS PATPSSVACS SSPGMDDKLF GKTTNVDNDV SNLTCSPAPL SENNLQRFSF  360
NLEKFDMGSL NNLGSSIIEL VQSDDPTSVD SGPMRSNAIN KLLIWKADIS KVLEKTESEI  420
DLLENELKLL KSESGVTCPF AVSLGSQMVG SGEKSFEGHV GVSDQVTRPV PLNIVDDANT  480
EKVPFSTNLH SVHENVKEED IDSPGTATSK FVEPLPVSCG TGGGYVNFSQ DLDSVPSAAV  540
KYLIPCTARK DVIVPCVDGK TSLEVNDSMD ILCGTIISSN KECANKASEV FDNLLPKDCC  600
KIGRMGTSSD TCNQTLIREK FVEKKRLARF KERVIALKFR ALHHLWKEDM RLLSIRKCRP  660
KSHKKNELSV RTTCNGNQKN RSSIRSRFPF PAGNHLSLVP TSEIINFTSK LLSESQVKVQ  720
RNTLKMPALI LDEKEKTISK FVTSNGLVED PLAIEKERSL INPWTPQERE IFLEKFAVFG  780
KNFRKIASFL DHKTTADCVE FYYKNHKSDC FEKLKKQDVG KLGKTYSAKT DLVASGKKWN  840
RELNAASLEI LSAASLMAGG IAGNKKIRAG SSLLGGYGKV KTSRVEDFIE KSGSFDILGD  900
ERETAAAADV LAGICGSLSS EAIGSCITSS VDAVEGSRDR KFLKVNPLYK LPLTPDVTQD  960
VDDETCSDES CGEMDATDWT DDEKAAFLQA VSSFGKDFAK IARCVGTRSQ EQCKVFFSKG  1020
RKCLGLDLMR PIPENVGSPV NDDANGGESD TDDACVVETG SMVETEKSGT KTDEDLPFYG  1080
TKTFNDDSNP VQARNMSAEL DESKGTDGTE VDIEDANVVS DACAIDIDSK LGCDVSKFAL  1140
CGSVSGQTTV IMSNSTEIRR DKANKLKSVP DTSSEPCEIN SFVEDRMVVS EVSSGRPGNE  1200
LERQRVSSPR CHDDRDSKQE ADSGVIVDLK SPVHILSTMV NAPVSSFGNS CSGLTSSTEN  1260
KHVAIGQPHT SPLSVDEHQA SSNSFLQNTV ASDIQCEKTA SQDRLSSTCD IQVSTDEQPP  1320
ITGISSDHVD TGSILQGYPM QAPIKKEMND DMNCSSSAAE LHLLSQKIEQ PDDQTKKLQS  1380
LDSDKTSRNG DVKLFGKILT NPSSAQKHNV GAKGSEENGT HSHKFSKPSG VKFTGHNADG  1440
NLKILKFDCN DYVGLENVPM RSYGYWDGNR IQTGLSSLPD SAILLAKYPA AFSNYPTTPS  1500
AKLEQPSLQT FSKNNNEQLL NGSNAVIDYQ MFRRDGPKVQ PFMVDVKHCQ DVFSEMQRRN  1560
GFEAISSLQQ QSRGVMGMNG VGRPGILVGG SCSGVSDPVA AIKMHYSNSD KYGGQSGSIA  1620
REDESWGGKG D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	7e-18	721	812	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	7e-18	721	812	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g07290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414365.1	0.0	PREDICTED: uncharacterized protein LOC108325798 isoform X1
TrEMBL	A0A0L9TZ17	0.0	A0A0L9TZ17_PHAAN; Uncharacterized protein
STRING	XP_007143686.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-173	MYB family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]