PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g06990.1

Common Name

LR48_Vigan02g192800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 462aa MW: 52654.9 Da PI: 6.2734

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g06990.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	306.7	5.5e-94	81	459	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+ A+av++++l + L+ l +++s +gd++qR++ayf+ +Laarl+ s y+ l ++t+ +eel+a++ ++ vsP+++f+h Vang06g06990.1 81 LIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTT----EEELNAFTDLYRVSPYYQFAH 171 689**************************************************9**999888886....7999999*********** PP GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182 +taNqaIlea+e+e +++H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ + +el+et++rL +f + + + fef+ l Vang06g06990.1 172 FTANQAILEAFEKEeernnRALHVIDFDVSYGFQWPSLIQSLSEKAttGNRISLRITGFGK----NLKELQETESRLVSFSKGFvSLVFEFQGL- 261 ********9988877789*******************9866677*****....99**********985389**8. PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 l ++ +Lr k++E++aVnlv l +l + + ++++L++v sl+P +vvvveqe +++ sFl rf+++l+y++a+fdsl+ lp Vang06g06990.1 262 ---LRGSRVINLRKKKNETVAVNLVSYLNTLS----CFMK-ISDTLEFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPL 348 ...77778899***********999997....3333.578*********************************************** PP GRAS 278 eseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkv........ksdg...yrveee.sgslv 359 es er +E++llg+ei++++ + + + e++e+W++r+e+ GF + ++s+k + qaklll++ +++g +rv e+ +g ++ Vang06g06990.1 349 ESAERLRIEKKLLGKEIKSMLNNDVDGvDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRthycplqfEEEGgggFRVSERdEGRAI 443 ******************98877557899****************************985222222112222334888766455555 PP GRAS 360 .lgWkdrpLvsvSaWr 374 lgW++r L++vSaW+ Vang06g06990.1 444 sLGWQNRFLLTVSAWQ 459 7************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.617	55	426	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-91	81	459	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MEDSEEDELL NLSLSVAADR ERKKKGKIIR EHNVSMSSAT ARKSYESYEG KIFRLLQMRE 60 QMLRQDHRRK GVVEDGSGLP LIHLLLSTAT AVDDNNLDSS LENLTDLYQT VSLTGDSVQR 120 VVAYFADGLA ARLLTRKSPF YDMLMEEPTT EEELNAFTDL YRVSPYYQFA HFTANQAILE 180 AFEKEEERNN RALHVIDFDV SYGFQWPSLI QSLSEKATTG NRISLRITGF GKNLKELQET 240 ESRLVSFSKG FVSLVFEFQG LLRGSRVINL RKKKNETVAV NLVSYLNTLS CFMKISDTLE 300 FVHSLNPSIV VVVEQEGSRS PRSFLSRFTD SLHYFAAMFD SLDDCLPLES AERLRIEKKL 360 LGKEIKSMLN NDVDGVDCPK YERMETWKAR MENHGFVATK ISSKSMIQAK LLLKMRTHYC 420 PLQFEEEGGG GFRVSERDEG RAISLGWQNR FLLTVSAWQS V*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MEDSEEDELL NLSLSVAADR ERKKKGKIIR EHNVSMSSAT ARKSYESYEG KIFRLLQMRE  60
QMLRQDHRRK GVVEDGSGLP LIHLLLSTAT AVDDNNLDSS LENLTDLYQT VSLTGDSVQR  120
VVAYFADGLA ARLLTRKSPF YDMLMEEPTT EEELNAFTDL YRVSPYYQFA HFTANQAILE  180
AFEKEEERNN RALHVIDFDV SYGFQWPSLI QSLSEKATTG NRISLRITGF GKNLKELQET  240
ESRLVSFSKG FVSLVFEFQG LLRGSRVINL RKKKNETVAV NLVSYLNTLS CFMKISDTLE  300
FVHSLNPSIV VVVEQEGSRS PRSFLSRFTD SLHYFAAMFD SLDDCLPLES AERLRIEKKL  360
LGKEIKSMLN NDVDGVDCPK YERMETWKAR MENHGFVATK ISSKSMIQAK LLLKMRTHYC  420
PLQFEEEGGG GFRVSERDEG RAISLGWQNR FLLTVSAWQS V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-56	88	458	26	378	Protein SCARECROW
5b3h_A	3e-56	88	458	25	377	Protein SCARECROW
5b3h_D	3e-56	88	458	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g06990.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414299.1	0.0	PREDICTED: protein SCARECROW-like
TrEMBL	A0A0L9TYV8	0.0	A0A0L9TYV8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SNK0	0.0	A0A0S3SNK0_PHAAN; Uncharacterized protein
STRING	XP_007143661.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	8e-54	GRAS family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]