PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g06210.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family RAV
Protein Properties Length: 358aa    MW: 39264.2 Da    PI: 9.3979
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g06210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.2e-144896155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Vang06g06210.1 48 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 96
                    89****9888.8*********3.....5**********99*************98 PP
2B3932.2e-29169267183
                     EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                     f+k+ tpsdv+k++rlv+pk++ae+h                    ++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+n+L++gD 
  Vang06g06210.1 169 FEKTVTPSDVGKLNRLVIPKQHAEKHfplssgsgsgvsprtvAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNNLRAGDA 263
                     99****************************9999877777774455699********************************************** PP

                     EEEE CS
              B3  80 vvFk 83 
                     v F 
  Vang06g06210.1 264 VRFF 267
                     *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-2448103No hitNo description
SuperFamilySSF541712.42E-1748104IPR016177DNA-binding domain
PfamPF008476.8E-94896IPR001471AP2/ERF domain
SMARTSM003805.1E-2949110IPR001471AP2/ERF domain
PROSITE profilePS5103220.3549104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2049104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.9E-39163284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29167281IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-28168278No hitNo description
PROSITE profilePS5086313.437169284IPR003340B3 DNA binding domain
PfamPF023621.9E-26169267IPR003340B3 DNA binding domain
SMARTSM010191.2E-22169283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDAATSTDET TTTSESLSLP PNQSPPPLIR IEPDAVSGEA ESRKLPSSKY KGVVPQPNGR  60
WGAQIYEKHQ RVWLGTFNEE DEAARAYDIA AQRFRGRDAV TNFKPLAGAG DDAESEFLNS  120
HSKSEIVDML RKHTYDDELQ QSTRGGRRRR DAEAASCGAY DVKAREQLFE KTVTPSDVGK  180
LNRLVIPKQH AEKHFPLSSG SGSGVSPRTV AAAAAKGVLL NFEDVGGKVW RFRYSYWNSS  240
QSYVLTKGWS RFVKDNNLRA GDAVRFFKST GPDRQLYIDC KARSGGGICE LNNNNAGGLF  300
VPVGPVVEPV QMVRLFGVNL LKLPGSDGVR VGYEGKRKEM ELFAFECSKK LKVIGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5316628811122DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335351KRKEMELFAFECSKKLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g06210.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413134.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like, partial
SwissprotQ9C6M51e-129RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A0S3SP310.0A0A0S3SP31_PHAAN; Uncharacterized protein
STRINGXP_007143801.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-126RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]