![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang06g06210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 358aa MW: 39264.2 Da PI: 9.3979 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.8 | 6.2e-14 | 48 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g Vang06g06210.1 48 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 96 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 93 | 2.2e-29 | 169 | 267 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ tpsdv+k++rlv+pk++ae+h ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+n+L++gD Vang06g06210.1 169 FEKTVTPSDVGKLNRLVIPKQHAEKHfplssgsgsgvsprtvAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNNLRAGDA 263 99****************************9999877777774455699********************************************** PP EEEE CS B3 80 vvFk 83 v F Vang06g06210.1 264 VRFF 267 *986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.24E-24 | 48 | 103 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-17 | 48 | 104 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-9 | 48 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-29 | 49 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.35 | 49 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-20 | 49 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-39 | 163 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-29 | 167 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.59E-28 | 168 | 278 | No hit | No description |
PROSITE profile | PS50863 | 13.437 | 169 | 284 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-26 | 169 | 267 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-22 | 169 | 283 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MDAATSTDET TTTSESLSLP PNQSPPPLIR IEPDAVSGEA ESRKLPSSKY KGVVPQPNGR 60 WGAQIYEKHQ RVWLGTFNEE DEAARAYDIA AQRFRGRDAV TNFKPLAGAG DDAESEFLNS 120 HSKSEIVDML RKHTYDDELQ QSTRGGRRRR DAEAASCGAY DVKAREQLFE KTVTPSDVGK 180 LNRLVIPKQH AEKHFPLSSG SGSGVSPRTV AAAAAKGVLL NFEDVGGKVW RFRYSYWNSS 240 QSYVLTKGWS RFVKDNNLRA GDAVRFFKST GPDRQLYIDC KARSGGGICE LNNNNAGGLF 300 VPVGPVVEPV QMVRLFGVNL LKLPGSDGVR VGYEGKRKEM ELFAFECSKK LKVIGAL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-53 | 166 | 288 | 11 | 122 | DNA-binding protein RAV1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 335 | 351 | KRKEMELFAFECSKKLK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang06g06210.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413134.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like, partial | ||||
Swissprot | Q9C6M5 | 1e-129 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A0S3SP31 | 0.0 | A0A0S3SP31_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143801.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-126 | RAV family protein |