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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g05210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CPP | ||||||||
Protein Properties | Length: 802aa MW: 88100.7 Da PI: 6.342 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.1 | 5.4e-16 | 512 | 550 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Vang06g05210.1 512 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKP 550 689**********************************96 PP | |||||||
2 | TCR | 50 | 5.8e-16 | 597 | 636 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ Vang06g05210.1 597 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTY 636 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.2E-19 | 511 | 552 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.747 | 512 | 637 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.7E-11 | 514 | 549 | IPR005172 | CRC domain |
SMART | SM01114 | 2.6E-17 | 597 | 638 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.6E-11 | 599 | 635 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence Send to blast |
LQMDTPDRSK INTPLSQFED SPVFNYISNL SPIEPVKSVH ITQTFNSLSF SSPPSVFTSP 60 HVNCHRESRF LRRHNLLDAS KGKGSSEDIN NVYSCEKTPA DSTQPCHESS EPQENTNPNI 120 SIRDASIEPC DENPNISIEV PQGLKYNLAS PGYEPVICAD EADSLLELPG KPGSDVSYVP 180 DDSEKDSIEG EMHLPALCQN EEKIEGPNCG VDDLINEASD LLMFSPPNMK EAFKDINKQL 240 NPSTKLTNLR TLLRQSATND GHQMHIVDTV ASGSEHEIEN HPCESGAATD TVQRQDKHNN 300 VALVASNPIE KVDDKLVYVT HRGIRRRCLD FEMASVQRKN LDGKSNTNSS AEKSDEMDVS 360 KGKQLLPIKH SGDSRKCVLP GIGLHLNALA SLNDCKNIKI ETLLSGRQPN LPSSSSSLQL 420 SASQDHQLSL VPTSVEKDME QSDNEVQPGE DCTQPLVHMP GEDCTQPLVH MPGEDCTQPL 480 VHMPGEDFQQ NSPKKKRQIY RRRLEQDGEG ESCKRCNCKK SKCLKLYCEC FAAGVYCIEP 540 CSCRDCFNKP IHVDTVLQTR QQIESRNPLA FAPKVIRSSD SVPEIGDDPN KTPASARHKR 600 GCNCKKSSCL KKYCECYQGG VGCSISCRCE GCKNTYGRKD GSVHSGIEAK PEEETEACER 660 GVMENASHKT ETQNTEDHLD HALPTTPLRL SRSLIPLPFS SKGKPPRSFV TTISSSGLFV 720 SQKLGKSSAP RSQPKFEMPV QTVPDDDSPV TCIKTSSPNG KRISSPNCDV GSSPTRRGGR 780 KLILQSIPSF PSLTPHNLRS D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-16 | 516 | 634 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 6e-16 | 516 | 634 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g05210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017415443.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A0S3SMQ4 | 0.0 | A0A0S3SMQ4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143298.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-110 | TESMIN/TSO1-like CXC 2 |