PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g04720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 495aa    MW: 55566.2 Da    PI: 6.5072
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g04720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.43.8e-26134220188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     +fYn+YA+ vGF+vrk+  ++sk +g++++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a++ v+++ +gk++vt++e +HnH+
  Vang06g04720.1 134 RFYNKYATLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRD-VNVKKHRKETRTGCLAHMIVTRQPNGKYQVTHFEAQHNHD 220
                     5*******************************************999.999************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-23134220IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MLPTIQHIKF SDLIISQRSW TVLVSCSFHG LLALSQTLIV LHRLRFLGYF VPLYNYRLSM  60
DGNRNGLGIL HEGSVDVGPE MSNNLDLNVE QNCCSPNIAH ASDNQSCPPS KSVHSTNTVL  120
GIGAEFESDD HAYRFYNKYA TLVGFNVRKD WINRSKVHGQ VVSRKFTCSK EGYRRKDKRD  180
VNVKKHRKET RTGCLAHMIV TRQPNGKYQV THFEAQHNHD NVNPNNANVV NLLNEFSVAQ  240
AMEAESNNSL GPKSESALDM LNKKINNPKR VVASCYKDLC HKLLKLSTIA SESEEAYQFA  300
MRQLDEVMVG VEKILTPKAE GEVVTSRNSD VDASESEPAK IFPNEHIIED QDEINSANGG  360
KDRRATSDRG HLITMTCNGA DSDRILNVEE SPQNTVGLYS FEANQVVNCM YEQTNLMVDS  420
QSNSSMMQPQ NIFSNPQDSP GQSQLLQEPI IQSTYLESMP INNQMRQGMD LDIQNPHSSS  480
FLLYDHRYRS SESA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g04720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412368.11e-178PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S3V7F01e-143A0A1S3V7F0_VIGRR; protein FAR1-RELATED SEQUENCE 5
STRINGXP_007143371.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-20FAR1 family protein