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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g04720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 495aa MW: 55566.2 Da PI: 6.5072 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.4 | 3.8e-26 | 134 | 220 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+ vGF+vrk+ ++sk +g++++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a++ v+++ +gk++vt++e +HnH+ Vang06g04720.1 134 RFYNKYATLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRD-VNVKKHRKETRTGCLAHMIVTRQPNGKYQVTHFEAQHNHD 220 5*******************************************999.999************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-23 | 134 | 220 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MLPTIQHIKF SDLIISQRSW TVLVSCSFHG LLALSQTLIV LHRLRFLGYF VPLYNYRLSM 60 DGNRNGLGIL HEGSVDVGPE MSNNLDLNVE QNCCSPNIAH ASDNQSCPPS KSVHSTNTVL 120 GIGAEFESDD HAYRFYNKYA TLVGFNVRKD WINRSKVHGQ VVSRKFTCSK EGYRRKDKRD 180 VNVKKHRKET RTGCLAHMIV TRQPNGKYQV THFEAQHNHD NVNPNNANVV NLLNEFSVAQ 240 AMEAESNNSL GPKSESALDM LNKKINNPKR VVASCYKDLC HKLLKLSTIA SESEEAYQFA 300 MRQLDEVMVG VEKILTPKAE GEVVTSRNSD VDASESEPAK IFPNEHIIED QDEINSANGG 360 KDRRATSDRG HLITMTCNGA DSDRILNVEE SPQNTVGLYS FEANQVVNCM YEQTNLMVDS 420 QSNSSMMQPQ NIFSNPQDSP GQSQLLQEPI IQSTYLESMP INNQMRQGMD LDIQNPHSSS 480 FLLYDHRYRS SESA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g04720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412368.1 | 1e-178 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S3V7F0 | 1e-143 | A0A1S3V7F0_VIGRR; protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | XP_007143371.1 | 1e-129 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-20 | FAR1 family protein |