PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang06g04340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 223aa MW: 25172.3 Da PI: 9.1134 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.8 | 9.3e-21 | 14 | 75 | 25 | 86 |
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++es s +++ ++l+ Vang06g04340.1 14 GQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESDSFWVMRNDLR 75 4779*******************************************9999999*9999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.9E-10 | 18 | 70 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MRRGRTAGLP LGSGQVEPKW ASVSSYCRKH GVNRGPVQCR KRWSNLAGDY KKIKEWESQI 60 REESDSFWVM RNDLRRDRKL PGFFDKEVYD ILDSGSQDFE QDEVSASPEK KDIFPPSNRD 120 FPAPIPISGV TNEKQSTPNP EMGSTSQGER KRKRLSTDGG EETLQIHLID VLERNGKMLS 180 AQLEAQNINF QLDREQRKIN GSNLVAVLDK LADALGRIAD KL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang06g04340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-160 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027936927.1 | 1e-136 | trihelix transcription factor ASR3-like | ||||
Swissprot | Q8VZ20 | 3e-87 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | I1LFM1 | 1e-121 | I1LFM1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G44620.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-80 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|